HsaINT0051824 @ hg38
Intron Retention
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl peptidase 7 [Source:HGNC Symbol;Acc:HGNC:14892]
Coordinates
chr9:137114463-137115177:-
Coord C1 exon
chr9:137114975-137115177
Coord A exon
chr9:137114577-137114974
Coord C2 exon
chr9:137114463-137114576
Length
398 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGGA
5' ss Score
6.86
3' ss Seq
AGGTTCGCGTCCCCCCACAGCCC
3' ss Score
7.53
Exon sequences
Seq C1 exon
ATCGCTTGGACAAACCCTGGGTTGCTTTCTTCGGGGGGCCAGCACTCTGTTTGGGACCCTCTCCCTCCCGCCCTTAGGGCAGCAGAACGGCCCCCACTCTCCCGGCCCTGCCTTGGAGTGGGGCACCTGCCAGGAGCAAGTGCTGGGGAGGCTTGGCGGGCGCAGCAGGGACTCGCCCTAGCGCAGCTCCGGATGGGGCCGCG
Seq A exon
GTAGGAGGACGAGCCAGTGGGGCGGGAGGCCGCGGAGATGGCCCGGGGGCCCTCTGCTTCCCCGCGCCGTGCCCGGGAAGGACCCCTGGGCAGCGGCCGCGGGGCGCGGGGTGTTGGGGGGCACAGCCCCGGCGCGGCGCTGAAGCAGCGACGGTCTCCGTGGGGACCGCGGGCGCCCGAAACACGTGGGGCCTGGAGGGAGGAGCGCGCCCTGGCGGCCCCGTGACCCCGCCCACGTGACGGGCGCCCGCGGAAGGCGACATGGGCTCCGCTCCCTGGGCCCCGGTCCTGCTGCTGGCGCTCGGGCTGCGCGGCCTCCAGGCGGGGGGTGAGTGGCGGCGCCCCCCGGCCCATTCCCCGGTCCCGGCCCCGCCTCTGAGGTTCGCGTCCCCCCACAG
Seq C2 exon
CCCGCAGGGCCCCGGACCCCGGCTTCCAGGAGCGCTTCTTCCAGCAGCGTCTGGACCACTTCAACTTCGAGCGCTTCGGCAACAAGACCTTCCCTCAGCGCTTCCTGGTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978:ENST00000473703:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.101
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF055777=Peptidase_S28=PU(17.0=59.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGACAAACCCTGGGTTGC
R:
GACACCAGGAAGCGCTGAG
Band lengths:
311-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development