MmuINT0052962 @ mm10
Intron Retention
Gene
ENSMUSG00000026958 | Dpp7
Description
dipeptidylpeptidase 7 [Source:MGI Symbol;Acc:MGI:1933213]
Coordinates
chr2:25356029-25356359:-
Coord C1 exon
chr2:25356231-25356359
Coord A exon
chr2:25356143-25356230
Coord C2 exon
chr2:25356029-25356142
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTCTCTGCACCTGCCCTCAGCCG
3' ss Score
6.84
Exon sequences
Seq C1 exon
CATGACAGTCAGCGCCCGGCTCAGAATCAAGCATGAACTTCCATCCTTGTTACCCTGTGGACCATGGTGTCCCCTCCTGGATCCTGGTCCTGCTGCTGTCACTGGGACTGTGCAACCTCCAGGCCAGAG
Seq A exon
GTGAGTACAGACTGGCTGCCCTTCCTCCTGACCCGCCTAGATCCCTGATGATCCCAACCAGCTCCTGAGTCTCTGCACCTGCCCTCAG
Seq C2 exon
CCGACAGAGTTCTAGACCCTGACTTTCATGAGAATTATTTTGAGCAATACATGGACCATTTCAACTTTGAGAGTTTCGGCAACAAAACCTTTGGCCAGCGGTTCCTAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026958:ENSMUST00000028332:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF055777=Peptidase_S28=PU(5.4=59.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCCTGTGGACCATGGTGT
R:
CTGGCCAAAGGTTTTGTTGCC
Band lengths:
178-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types