GgaINT0126624 @ galGal3
Intron Retention
Gene
ENSGALG00000009105 | DPP7
Description
NA
Coordinates
chr17:688876-689276:+
Coord C1 exon
chr17:688876-688976
Coord A exon
chr17:688977-689162
Coord C2 exon
chr17:689163-689276
Length
186 bp
Sequences
Splice sites
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
3' ss Seq
CTGACGGTTCCCTCCTGCAGCCG
3' ss Score
9.41
Exon sequences
Seq C1 exon
GGAGCAGAGCGGAGCAGAACGGGACGCCGCTATGGGAACGCGCTCGCCGCAGCTGCTCCTCTTCGTCCTCTCGCTTCTGCTGCCGGTCCGCGGCGCGCCCG
Seq A exon
GTGGGTGCTCGAGCCGGGACCCCTCGTTTCCCCCACCCCTGCGCCCCGAGCCACCCCTTCCCGGCGGGAGCGTTCGGTCGGACCGGGCGGCACCGGGCGCTCGGGGCTGCCCCGCGCTGGGCCGGGCCGTGGGTCGGCGGCGGCAGGCGCTGCCGGTGTCCCGGTGCTGACGGTTCCCTCCTGCAG
Seq C2 exon
CCGCCCAGCCGGCCGGGCCGGGCCTGGAGGAGCAGCTCTTCCCGCAGGTGCGGGACCACTTCCGCTTCGAGGCCGGCGGCAACGAGACCTTCCCGCAGCGGTACCTGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105:ENSGALT00000014829:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF055777=Peptidase_S28=PU(5.4=59.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGCCGCTATGGGAAC
R:
CTGAGAGCAGGTACCGCTGC
Band lengths:
194-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]