RnoINT0050870 @ rn6
Intron Retention
Gene
ENSRNOG00000012640 | Dpp7
Description
dipeptidylpeptidase 7 [Source:RGD Symbol;Acc:71073]
Coordinates
chr3:2573057-2573387:-
Coord C1 exon
chr3:2573259-2573387
Coord A exon
chr3:2573171-2573258
Coord C2 exon
chr3:2573057-2573170
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTATCTACACCTACCTGCAGCCG
3' ss Score
6.13
Exon sequences
Seq C1 exon
CATGACTGCCAGCGGCCCGCTCAGAATCAGGCATGGGTCTCCATCCTTGTTCTCCTGTGGACCATGGGGTCCCCTCCTGGGTCCTGGTCTTGTTGCTGACACTGGGTCTGTGCAGCCTGCAGGCTACAG
Seq A exon
GTGAGTGCAGACTGACTGCCCTCCCTCCTGACCCTCCTGCGTCCGTTATGACCCCTAACAGTTCCTGAGTATCTACACCTACCTGCAG
Seq C2 exon
CCGACAGCGTTCTAGACCCTGACTTTCGTGAGAATTACTTTGAGCAGTACATGGACCATTTCAACTTTGAGAGTTTCAGCAACAAGACCTTTGGCCAGCGGTTCCTGGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012640:ENSRNOT00000017271:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF055777=Peptidase_S28=PU(5.4=59.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGTTCTCCTGTGGACCA
R:
GGCCAAAGGTCTTGTTGCTGA
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]