HsaINT0051824 @ hg19
Intron Retention
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:14892]
Coordinates
chr9:140008915-140009195:-
Coord C1 exon
chr9:140009099-140009195
Coord A exon
chr9:140009029-140009098
Coord C2 exon
chr9:140008915-140009028
Length
70 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
AGGTTCGCGTCCCCCCACAGCCC
3' ss Score
7.53
Exon sequences
Seq C1 exon
CCCACGTGACGGGCGCCCGCGGAAGGCGACATGGGCTCCGCTCCCTGGGCCCCGGTCCTGCTGCTGGCGCTCGGGCTGCGCGGCCTCCAGGCGGGGG
Seq A exon
GTGAGTGGCGGCGCCCCCCGGCCCATTCCCCGGTCCCGGCCCCGCCTCTGAGGTTCGCGTCCCCCCACAG
Seq C2 exon
CCCGCAGGGCCCCGGACCCCGGCTTCCAGGAGCGCTTCTTCCAGCAGCGTCTGGACCACTTCAACTTCGAGCGCTTCGGCAACAAGACCTTCCCTCAGCGCTTCCTGGTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978-DPP7:NM_013379:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.259
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF055777=Peptidase_S28=PU(17.0=59.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCGACATGGGCTCC
R:
CTGAGGGAAGGTCTTGTTGCC
Band lengths:
174-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)