GgaINT0022726 @ galGal3
Intron Retention
Gene
ENSGALG00000002486 | RNF123
Description
NA
Coordinates
chr12:2210386-2219180:+
Coord C1 exon
chr12:2210386-2210470
Coord A exon
chr12:2210471-2219037
Coord C2 exon
chr12:2219038-2219180
Length
8567 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CCGTGTCTGTCCCTTTGCAGGGC
3' ss Score
12.59
Exon sequences
Seq C1 exon
GACTGGAGAGCGTGGACCATTACCCGATCCTCGTAGCTGTGACGGGAATACTGGTCCGGCTGCTGGTGGACACTGATGCTCAGGG
Seq A exon
GTGAGTGGCTTTTGATTTCTGAAGCACAGCATTGCTGCACATGGCATTGCTTTCCCCACGTGTGTACCCTGGGAGATGCTGCAGGAGCAATAGGGGTGTGTGGGGACTGAGGTGAGGAGAGGCAGATGTGCTTGGAGCATTCAGCACGTCGATGGCCTCATGCTGGGGGGCAGGACAGCTCACACATCTCTGCTGAAAAAGCTCTCAGTGGAGCCATGGCTCGGGCTGCTGGTTTGTGTGTGCCAGTGCCTGCTTGCATCAAACTCTGCAAGCCCTCTGCAGCCTGGTCCTGCTCTCTCCCAGTGCTGCCCTGCCACCGTGCCCTGTGGGATGCTGTAGGAAGGGGCTCTTATGTCTGCCCTGTGCATCCTGCTTTGGAGAACATGACAATCCCTGGCTGTGTGCAAAGCAGAGCCCCATCTGGCCGTGCAGCTCAGCCATGCAGACAGTCTTCCTGCTTCTTCTCTCAAGGACTCAAAGATGTACACAAATGCGTCTAATTATATCCTGCTCCCGTGGCTGCTGCACCAGTCACACAGCCCCGAGGGTGACAGTGCCAAGTGCTCAGCACAGAGTCACTGGCAGTGGCCTTTCTGGACTCTGGGTGTGGGTGTGTTTTGCTCTGCCCCAGAATCCTGCCACGTGGAAAGGGCAAACATCATAAGTTTGAAACCATAACCGGTTCCTGCCTCCTGGAGGGAAAGGAGGGGTGTAAAGCAGTTCCCTGCAGTGCCCAGCAGGACGAGGTCTTCCCCATTCCCTGTCCCTAAAACGTCTGTCCTAGGGCTAAAAGCTGTTTCTCTGCCCTCCAGCCCAGTGAACTTAGGAAGCAGGGTGAGGGCTGGAACCTGCCAGCTCCCAGCCTGCATCTCTATCTCCCCTTGCCTGCAAAGCCAGTTGTGCTTTGGGTTGGTGACAGTCAGGCAGCCGCTGTCACAGATGCTGAATGGCACTGTCCCCCATGTGTGAATGGTGCCCACGGCAGCGGTGACAAACAGTGACAAACCAGAGGTGCTGTACCCCGTTGTGCAGCTGGGAAGTAGTGAGTCTGAGGCTGTTTATCAAGGCTTTGCAGCCACCTCCTCGAGCACTGGAAAGCAGAGGTAAATAAGAAGCAGGGGAATGGTGCAAGAAAGCACTGTGTCCTTACGGTGGGGCTGGCTGAGTGGGAGAGGCACAAGGTGAGACGGGAGGAAGCCCAGGAAAAAAATTCTCTAAAACAAAATGCTCCTGCATTATTTTGCAAAGCCCAGCAATAATTCTGAGATTTGATACACCGCTGATCTATAAAAGGCAGGCAGGCATTGCAGGGAGGTTGCTCAGGTCAAACAAGACAGAAGTACCACGGCTGAGCATCCCAGAGACCCAGAGCTCCCAGAGCAGGGGACAGGCAGCCTGCTGGTACCAATAGCAGAACTGTGGGCAGATGACTCCCAGGGAAGGAGAGCCGAGCACTCACCTTCCTACCAGCTCTGAGCTGGGGATCAGGGCTGTGCCCTGCTTACAGGGTGGTTCTGCTCAGCACAGCACATTCAGAACCAGCAAACAGGGCTGCAGGACCAGGAGGTGCAGCGGGACTGAGCACGGCCCCATTGGGATCTCTGCTCACAGTCACTCTAACACAGGGAGGTGGTGCAGCTCAGCAGCAGCCGGCACGGAGCAGGCAGGGGGAGGTGTCCTTTTCCAAGGACGTGAGCAAGAGGATGCTCCTTGGAGTCGAAAAGGAGAATTAAACCTTTATTGGGTCGGTTCTGTCCCGCAGGCAATGGCTGCTGTGGGTTGTATTACTGCAGGGAGCCAGCAGCAAGGATCCCATCCCCAGGTTCTGTCTGTCGGACCTGGTTACGTGGACCCAAGAGGAGACAGCCCTCCTTTCTCCTTTTTTGATTGCTCTCAGTGGGATGAGCAGGTAAAGGATGGGCATTCCCCTTCTGCAGTGCCTGGAGGTAGAAGAAGGAAGAAATGTATTCCAGGTGCCATTTGACACCTCCCAGATTTCCAGAAATCATTAGCAGAGCAATTACACCATGTGAGTTTGCTCAGAGGAGCCTCTCCATAGGAATTACCCAGAGCTAGCTGTTAACCTGCTGCAGGGAGCTCTGCCCCAGTGGGCGAGGACAAAGGGCAGGAGGACCTCCTGTGACCTCCTTGCTTGAATGGGCTTTGTCTGTCTGTGAGCTGACCCTGCACCAGGTTCTGGGGGCTTTGCCCTGGGACTGCACGCACTGCAGGGAGAGCAGGGCTCTGCACAGTGCCCTGGGTGCCTCAGCTGTGCTGCCCAGCTCAGTAGGCTCAGTCAGGCATCAAGTCCTCCTATTACGGCCTCCTGGCACAAAAAGGGCCATTAAGCACAGGATTAGGGAACATTGCCCGGGCTGGGATGTGAGGAGACAATTGATACATGGTGTGCGTTAGTCCGAAATGCACTCCTCAGGTCTGTGGGGATGGCTGTGCTGCTCTCAGCGAGGCAGCACTCAGTGCCCAGCGCCCGCTCTGCTGAGCCCCAAGGGCTGACCAGCTGCTCCTGGCACTGGCAGCAGGGTGAGGAGGAGAACTGTGTGGCATCCTCTGAGAGCTGCTGGCCTGGGCAAGAGCAGAGCCCGAGGACTTTCATGCTCGGCTCTCTCCTGAGGGGTAAGACTCGCAGATGGGCAGGGTGCAGGATGGAGCCTGCCAGCTTACAGCAGGGTCTGTGGCAGAGCTGTTCCAGTCCCCACAACGGAGACGTGGCAGTGGTAGGCAGCAGCATCACTGATGGTGCTCCCAGTGCCCAGCAGGGCTAACGGGATGCCCGTGTGCTCCATGCTTTGCCAGGCCCTAATGACCATGCCTTGCTTTTATGGGGAGGAGAGGGAAGGTGGGAGCTGAGCCCGGAGCTGCTCTGAATCGCTGGGACCATGCCAGGGACCCGGGCAGCCTTCAGCCAGTATCATCCCCCCGTTTGTCTGCTAAATAATTGAGCAGATTTTCTATTAAGCCTCCTTTGGAGTGAGCTAATGGAGCCGTGTTGGCCAGATCTTGTGTAATGATACTGATGAGAGCGGGCAACAGGGGAAAGGGCAGTGCCCGAAGGTTCTCCGCAGGTGTCCGTGTGCGAGGGGACACGCTTGGTGGCAGCAGGGCTGCAGTTCGGAGGGCTGGGACGTGTGCAGGGGGTCAGTGGGTTTGTCGGCAGCACAGCTCTGGTGGAGCCTTCTGGGGGGCTCCCAGAGAGCGCCTCCCAAAAGGTGGGGAGGACAGAGGGAAGCACTGTGGTCACCTGGTTACGGGCTGCTCCGCTCACTGCACCCTGGGCAGAGGGTGCACAGGCTGGGGTCTGCCGTGCCCTGTGGGGTTGGCACAGGCAGAGGAACCAAGCTTTGCTGCCTGTGTCTCTTTGGAAGTCCAGGAGCGTGGTAAGGGAGGGGCCCAGGTGCAACCAGCCCCGGTGGTAGGAGGGGACCAAGATGTGAAGTACGGGGGACAGATGATCCTTGGTCCCCACACACCCATATTGCTGTGCTGTGTGCCAACCCGTGGCATGGCCGGCTGGGCCAGAGTGGTACAGGTGGCTGCCAGGAGGGGATGGTGGTGATGGAGACCATCTGCTGCATTTCCAGCCCTGCCTGTTAGGGAGGCCATGCTCATGGCTGTGCTTTCCCTGGCTGAGATTTGCCATTCAAGCTGCCTGAGGGACTGCTTTGAGCGTTCCAGCACCTCGCTGGAGCAGCACTGCAGGGCTGAGTCCTTTCCTGGCACCGGAACAGTGTGACACACTGCGATGGGGTTTTCCTGGGAAACGGGGAGCCCTTGTGACAGGCACTGGAACAGCCACATCCACGGCACCATGGGATGGGGTAGGGCAGCTGCAGGGAGCAGCAGGCCCTTTGCTTTGGGGTGGATGGTGCCGTCCCCTCTCTTCAGCACCTCTCTGGAATGCTTTTCCAGAATCTGAGGTGAAGCATCAGCATGCTGCCGTGGTGCAGCAGCCAGATCCCTCAACAGGGGATGGCTTTGCTCAACACAAAAGCAGGAGGGTAGGGTTCCCATTATAAAGGGCAAACCCATGTCCCCCTCAGTGAGATCCCTGCACAGGTGCAGAGCCAGGGGACAGTACCACCACAGCTCTGTCCCCAGGGGACAGGGCATCACTTTCCAACCCTCCCCACACCAAAGCTCCATACCAGCCCCGGCAGCAGCCGGTGTGGCCGCTCAGCATCCTGGGCTCATCAGCAGTGCAGTGCTAACACGAGGGGACAGCGGGTGTGGGCAGTGAGGTCAGGGCCGGCAGCGGCTGTCAGTCCCCATCCCTTGCCAAGCAGTGGCTGCAGGGCTGATGGCACGGGGCTGCACAAGGTCGGTGTCAGGTGGTGAGCCTGAGCGCTTTGGGCAGGGCTGACTTTGTGCTGGAAATAAGCTGCTTGTCTCTGTGCTGGAAGAGTGGAAGGACGGGCGAGAGCTGCACTCTCTCATGGTGACTGTGCAGGGGTGGTGGTGTCCCTCTGCTTGGCCCCGTGTCTCTCTGTGGTCCCCCCAGTCCCTCAGGGAAGACTTTGCAGTGTCAGGGCTGGTCTGCTCCTGAACAAGCAGCTCTCCCACCCCTCTGAATGCTGCTGGTTCCTGAGCGTGCTGTGTGCCACTGGTGCTGCCCCCTCCCCACCTCACAGATGTCACCTCCTGGGGACAAGTGACCAGAGGCTCCCCCCAGCCCAGCCCAGCCATCAACACCGCACGTCACACCAGCCCCACACAGATCTTGGGGTTCCTGCATCCCCCAGCCCAGCTGCCCCGCTGTGAGGGCAAGGAGACACACAGCCTAGCATGAGCTTAAAAAAATAGGCATTTTTTATTCAAATGTAACTGGAGAGTGATGGCCCGAGAGAGGAGAGCATTACTCACATTTATCGACAGGCTCATTAGATTACTGCCTCAATAGCTGTGCTCGAGCAGCGCACGTCCATCTCAAGGAGAAGCAGCGAGCGCGGGCGGTGCGGGAGACCTCAGCGTCCTTGGTGGCACGGGGAGCTGCGAGCAGCACTGCGTCGGTCACCTCCTGGTGCCCAACATCACTACGTACAGCTTCAGGGGTGTTCAGAGGCAAAAGCGTTGCGATGTTTACTTGGCTGGGTGCTGAGTCCCCTCTTCCCCATGCAGTCCCTCAGTGGATGTGTGGGGCCACAGGACCGTGCTCCCTCCACTCCCAAGTGGCTGGGGACAGTGGCATGGCCATCCCTGAGAGCCCCTGAGGACAGCACTGGGGGATCGGGTCGAGAGTACTGGGCTGGATCTTGCACACCCACAGCCCTGGCATCACCGCTGCCCAGACAAAACAGGGATCACGGGCGTGCTGAGTCCATCAGTGTTGCCCTTATGCCGGCGGCTGAAGCGGTGCAGGTGGTGCTGAACCCCCCCCATGTAGTCAGGCTGAGAGCTGGGGCTCGGCGCTGCTCTGAGCAGGAGAACAGCTCAGCCCCACTACGACACGATGGGGGTGTCCGAAAAGACGGAGCTGATGGACTCGGTGTCCGAGCGCAGCTGTAGCACCTTGGGGTGCCTGCCGTCAGGGAGGGCCTCACCGGGCGCCGGGCGCTCCTTGGCATCCAGCGCCTCGCGGGCGGGCTCCAGGAAGGCCACGTGCTTGCTGGCCCTGCGGCTGGGCCCGTCGGTGGCAGGCGGCGTGGCGCTGAGGATGGAGGACTGCGCGCTGCACTCCTGTGGGGGGCTGGGGGGGGCCATCCTGCAGCACGGCGGGCAGCGGCACGGCGTCACGAACAGGTAGACGAGCACCAGCAGCAGGCTGACGATGCAGCCCAGCAGCGTGGTCAGGCCGGTGCTGAAGGCCTCCCCGTCCGGCTTGGAGTAATGCACCGTCACGTTGACCTCGCACAGCCGGCTGACGTTGTGGGGGCCGCTGATGGCCAAGCAGACGTAGACCCCCGAGTGCCAGGGCCGGGCGGATGCGATGCGCAGGCTGCCGTTGTGGAACACCTCGACGGAGCGGTTGGCGTTCCCCGGGGGCCGGATGGGCTCGTGGTGCGGGGAGATCCACATGTAGGCGGCGTGGGGCAGGCTGGCGTTGCAGGCCAGCAGCAGCGCCCGGCCCACCGTCACCGGGAAGGGCACGGGCTGCGCGGGGTCTGGCTCGGCCGAGCAGTTCTCAAACAGGTGGCTGTACTTGAGGAGCTTGATCAGGGAGCGTGGCACGGCGTCGGATACCTTGCAGGTGTGCTCCTCGAAGAAATCCCACACCGAGCTGAAGCCCCGCTGCCTCCAGCGCTGCAGCATCAGGTAGAGCGGGCAGCTGCAGCGCACGGGGTTGTTGTGCAGGTAGAGGCCGTTGCGGACGTGCTCGGGCAGCGCCGCCAGCTCCTCCACGGGCAGGCTGAGCAGGCTGTTGGAGGACAGGTCCAGCGTGCGCAGGCTGAAGTTGCCCAGGCCCTGCACCGCGTGGAAGGGGAAGGAGGTGAGGTTGTTCCAGCTCAGGTACACCTTCCTCAGCCCGCTCAGCCTGGCAAAGGCGTTCTCGTCCACCCGCGCGATGTGGTTGTTGTAGAGCAGGAGCTCCTCCAGGCTCACCAGCTCCTCGAAGTAGTGCCTCTCGACGGCGCGCAGGCGGTTGGAGGACATGTCGAGGTGCCGCAGGCGGGACGCGTTGTGGAAGGCGCGCGGGGACAGCTCGCCGATCTGGTTGTGGCCGACGTGCAGGGCCTCGAGGTGCGGCAGCGCGGCCAGCCAGCCGTCTTGCAGCTGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCAGGGGCAGCCGTGCGGTGAAGGACGCGCAGGAATGTCATTGCCGGCTCCTGGGCTCTTCAGTGCGAAGCAGAGAGAGGGGCTGGGGAATTGGTTTCCATTAGGGCAGCAAAAAGCTCATTTGGCCGCTGTGGCTGCTGGGCGCTGAGGGGCTGTTAACCCCCTGCTCCCCAGCACGGCTCAGCCAGCGACAGAGATGGAGACTGCTGTGCCCAGCTGTGCCCTTGCTGGAGGTGGCCACGGGGCTGTGGATGGGACACAGGGCAGGTGCCCGATGGAGGCAGTGCCTGAACAGCGCTGGGGGCTCTGGATGCCACACTGTGCCCTTCCTCTGTCCAGGCCATCCCTGCTGATGCATGAGTCCTGAAGAGCCGCAACCGCTCTCTCCCTCCTCCCTGCCAGGGCACTGACATGCCATAGGGACACCGTGTGCTGTCCCCGAGGTGCAGATGCGCTCCAGTCCTGGGCTGCTGCGCAGGGCCAGTGCTGTGCCCTCACCCTGCAACGCTGGTGCCGGCTGCTTTGGCCACCCTGCAGCACCCAGGGTGCAAGCCAGCACCCGAGCCTGAGGTGCAACCTCAGCAAATGCCAATGCAGCACATTGATCCAGAGCTCTGCAGCACACCCCCAGTGGGATGGTAGTGGAGGAGGGGGAGGAGGAGGAATGCCCCTCAGCTGCCTTGATGTGTGCTGGGGGCTCCTGAGGACTGGGGTCTCCCACCATGCTGCATTTGCCTTGGGCACAGCTCCTGCAGAGCAGGCCAGCTGCGTGGTGCTGGGGCAGAGTCAGGACCATGCCTGGGGACGTGGGGACACAGGGGCAGAGCCTGACCGTGTCTGTCCCTTTGCAG
Seq C2 exon
GGCTGAGCGTGCGACAGCGGTGCTGCTGGCGGACCCCTGCTTCCAGCTGCGCTCCATCCAGTACCTGCTGGGACACGCCGAACCTGCAGCCATGGCAGCAGCTGCTGCGGCCACAGAGAAACGCCACTTCTCCCTGAGCACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002486:ENSGALT00000003917:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF042167=FdhE=FE(14.3=100)
A:
NA
C2:
PF042167=FdhE=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]