HsaINT0141256 @ hg19
Intron Retention
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:21148]
Coordinates
chr3:49753826-49758086:+
Coord C1 exon
chr3:49753826-49753910
Coord A exon
chr3:49753911-49757943
Coord C2 exon
chr3:49757944-49758086
Length
4033 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TTGCACCCTCCCCTACCTAGGAG
3' ss Score
8.58
Exon sequences
Seq C1 exon
GCCTAGAGAGCGTGGACCACTATCCCATTCTGGTGGCAGTGACGGGCATCCTGGTGCAGCTCCTGGTGCGTGGCCCAGCCTCAGA
Seq A exon
GTGAGTGTTGGGGACCGTGGGCCCCTGTGGGAGTTGGGTGTGTCTGGTGAGGAGGGGCTGGACAGGGCCTCCTGGTACTTCAGTTTCCTCATCTGGAAAATGGACCTCAGCATCAGGTTTTGAGGCAGAGGGAAGGTGGTGAGGTGTGAACGGCCTAAATAGGGGGCAGACGGAGCTGCTCTAAGTAGGAGAATCTGGGACCCCAGCAGGACAGGTGGCCCTGGCCCACAGAGCCACTGGCTTGTGGCCATGCCTCAGGCCAGGCATGGGAGGCAGGACTCCGGAGGGTGTGCCGTCCTGTGGTGGACAGGGCCAGGCCGCCAGGAGAGCTGAACACACGGAGGACCGCCATTGTCTGCAAAGGCTCTAGCAATAAGCATGTGCTACCTTTATTAAACTCTGGAGCAGCGAGGTCCAGGATGGCCATGGGGGCCCCCAGCTCGGCCCCCACACATGAAGGGCTCCCAGACCCCCCTTCCCTGCCCCCCTGCAGTGGGAGCAGTGAGATGCATATGAAGCCAGGGTACCGCCTCAGCCATTAGGCTGAGACCAGTGCCAGCCCTTAAGAGGCTCCTGCTCTCGAGGGACGTGGAGTTCCGGCTCGGCCCTCCCAGCTCGGCCATGCTCGCCAGGCTTTTCGGGCTTTTTACTGCTGAAAAGCAGGGGTGCAGGCCATGATCCCCTTCACTGTGTCTTGTGAGCCCACAGAATGGGCTCTGCCTTCAGAACAACGGGTGGATGCCCCAGGCCAGAGAGAGCAGGGCCTCTGGCTGGGGCTTAGGCCAGACCACCAGGAACCTCTTGAGGAGCCTTTCCTGCCTGGTGCCTGCCCACCGGACTCTGCGTGAAGTTGTGAAGCTTTCAGGAGGTTGGGTGTTGGTGGATGGAGGGAGTCCCATTTCACCAGAGGGCGGGCTTGTTTCCTCTTTCTGTCCTGGGGTGTGGGCGAGATCTTCCTTCAGAGCCGCCTTCTTTTCCCTGTGGGCCCACTCCCTCCCACCCCCTTGGGAAGGGGAGGTGGCCCTGCGTCAGCTCTTGAGCACCACTCCTCGAGAGCTGTCTCAGCCCCTGAGGGTGGACGGGAGGCTCTGCTACAGGGGTTCTTCCACAGGCTGTAGAAGAACACAGCCACTTCCACAGCTGTGCTGTGTTGAAAGCCACAGGGGCCTGGGTCTCTCAGCCTCACAGGGCATTTGGGCACTAGGAAGTCCGCGGGAAAGCAGGAACTAGCACACCTTGCAGGGCCTGGGGCCTTTGGGTCCTGTGCAGGGGCAGAGCAGAAGGCAGGTTGGGGACCACAACCCCTGTCTCTACCAGTGAGCGAGAAGGCCCATTGTGTTTCGAGGCCCATACAGGAAGCTGGGGGGCCAGGCACAGTGCTTCCCACCAGTATCTGCCAGTTCTCTGGACCGAAGCAGGGAGCAGGGCGAGCAGCAAGAGGGTGGGGGCCTGGGTGGGGGAGCCCTGGGCAGTCTAGGTTGTCATGGGACCCTCGGAGCCTATGGAGCTGGCGGACTCAGAGCCAGCCTTCAGCTGCAGGCCTCCAGGGTTGTAGAGATCGAATTCCTCAGCTACTGCCAGCTGCACGCGGCCATTGAGGCCCCTCCGGCCTGGCTCCAGAAAGACTACGTGCTTGTGGACGCTGGCCTTGCGGCTGGGTGCGTCTGGCGGTGTGGTGCTGAGTACTGAGGACTGTGCGCTCAGCTCTTGGAGCGGGCTGGGTGTTTGGGGCCAGCGGCGGCAGCGGCAGGCACGGCGGCAGCAGCGGCAGGGTGGGGCGAACAGGTAGAGCAGCACGAGCACAAGGCCCACGGCACAGCCCAGCAGTGTGGTGAAGCCTGTGTTGAAAGCCTCGGGCTCTGGGCGCGGAAAGTGCACGCTCACGTTGTACTCGTGCGTCTGGTTGTGGTGCAGGCGGGGCCCAGTGGCCAGGCACACGAAGAGTCCCGCATGCTGCTCCTGTACGTTGCCTATGGCCAAGCTGCCGTCGGCCAGCACCGCGATGCTGCCATCGCGGGATCCTGGCGCCCTGAGAAGCTCCTGCTGCGGCGAAACCCAGGCAATGCGCATGGCCGGGACGCTGGTGTTGCAGTAAAGCCTCAGGGACCGACCCACCAGCGCGTACAGGTGCTCTTCCGGCCGCTCTAGGCCAAGAGCTGGGGCCGACGAGCAGTTCTCAAAGACGCGGCTGTGCTGGAAGAAGCGCACGCGGGACGCGGGTACCTTGAAGGCCAAGCATACGTACTCGCGCGCAAAGTCGCGCACGGCGCTCAGGCCCCGCTGGTGCCAGCGCTGTAGCAGGTGGTAGAGGCGGCAGTCGCAAGGCAAAGGGTTGTTGTGCAAGTAGAGGCCGTTCTTGAGGAAGGCCGGCAGCGCGGCCAGCTCAGGTACGGAGATGTGTCCCAGCCGGTTGGAGGAGAGGTCCAGAGTAAGCAGGTGGGTGGCGCTCAGACCGTGCAGGTGGTCGAAGGAGAACGAGGCGAGTTCGTTGCAGCCCAGGTAGAGATGGCTGAGCGCGCGCAGGCCGTGGAAGGCATGCTCGTCCAAGTGCACCAAGCGGTTATTGAACAGAAGCAGCTTCTCCAGCGCCCCCAGCCCGTCGAGGTCGTGGCGGCCAAGCGCCCGCAACGTGTTAGATGATAGATCGAGCAGCCTCAGGCCGCTGGCGTTGACGAAGACGCCGCGACCCAGCGCATCTAGTTCGTTGTGGTCTAGGTGCAGGGCGCGCAGCTGGAAGAGGGGCGCCAACCAGCCGGGGCGCAGGCGCTGGAGCGCGTTGTGGCTCAGGTCGAGGTCCGCAGTAGCGGCAGGTAACTCGGCTGGCACGTCCTGCAGCCCTAGGCCAGTGCAGCTTAGCAGGTCGGCAGCGCAGATACATTTGTAGGGGCAGTTGTGGAGCGCACGGGGCGGGAAACCCTCGGAGTCCGGGGTGCCTAACCCAACGCGCAGCATGCAGAGCAGTGTCCCCAGCAGCACCAACCAGGTCATGGCGGCGACCACCAGGGACAGTACAGAGCAGCTCTGTGCAGGTTGCAGTTCCAGGACTCACCCTCTTCTGCTCTAGTGCGACATGGGTGGCACCGGATGGCCCTTGCCGAGGAGGCACGGCGGGTTCTTGCCAGCCGACGGCCCCTACTCTCCGGTTCCCAGGTTGTGAGGCGGTGCGGCACTCTTAGCCGCGCTCCCTTCGGCTTCGCTAGCCCTCTCCAAGCGAGTTCCTGATCGGCTCCTAAATACTCCCCCCAGGGGCGGGGCCCGGGCTCCTATTGGTTCCCGTTTGAGGAGGCGGGGCGGCTACATCCCTTTGTGCCCAATGGCCCCGCATGACCGCCAGATGGGGAGCAAGGCCAACCCCAAAGTCCCCGTCAGCCTTTGGCTGGCAGCTCTCCGCCGCTCGTTTTTCCTCGGGGAGTAAAAGGGGGAGTCTGGAAGAATGTCTCCAAGCTGCTGTTAGTGTTTATTTGAAGTGACTTTGAAGGACTGATAATATTATGGGGCAGGCAGACTCTCACTATCTTAAGGTGGTTCGCCTGAGCCTTCTTAAAGTGGTACCCCAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCAAGGCAGGTGGATCACCTGAGGTCAGGAATTCGAGACCAGCCTGGCCAACCTGGTGAAACCCTGTCTCTACTAAAAATACAACAATTAGCCGGGCGTGGTGGTGGGCGTCTGCAATTCCAGCTACTCGGGAGGCTAAAGCAGGAGAATCACTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGTGCCATCGCACTCCAGCCTGGGCAACAGAGCGAGACTCGTCTCAAGAAAAAAAAAAAAAAAACAGGCTGTGTGGCACCTTACTAGAATACAGGACTTGGGGTTTGGGAAGCAGGGAGACGGAAAGGATGCAGGGGGGGTGATCATGTACGAGCCATGGCACTCCTCATTGGCAATCCCAAGAGAGACTTTTAGCCAGGCCCCAAGCCTTCTGACTGCCCTTGCACCCTCCCCTACCTAG
Seq C2 exon
GAGAGAGCAAGCCACATCAGTGCTCCTGGCAGATCCCTGCTTCCAGCTACGCTCAATATGCTATCTCCTGGGACAGCCAGAGCCCCCAGCACCTGGCACTGCTCTGCCAGCCCCTGACCGGAAGCGCTTCTCCCTGCAGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068-RNF123:NM_022064:35
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF042167=FdhE=FE(14.7=100)
A:
NA
C2:
PF042167=FdhE=PU(23.9=53.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)