RnoINT0127645 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116829837-116833558:-
Coord C1 exon
chr8:116833474-116833558
Coord A exon
chr8:116829980-116833473
Coord C2 exon
chr8:116829837-116829979
Length
3494 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CATGCGCCCTCCCTATCCAGGAC
3' ss Score
11.63
Exon sequences
Seq C1 exon
GGCTGGAGAGTGTGGACCACTACCCTATCTTGGTGGCAGTGACCGGCATCCTGGTACGCCTCCTGGCACACGGTCCATCCTCAGA
Seq A exon
GTGAGTACTGGGGACTGTTGGCTCTCGTGGGAACTGGGTGTGCACTTTGAGGAGGGGCTGATAGGGCAGAGCCTCATGGTACCCAATTGTCTCAAAATCAGAATCAATTTTGGGACCCTGAGGCAAGGAATACCAGGTGATGTGTAAACTGCTTTAACAGGCGTCAACATCAACTGCCCGTGGCTGGGTGGGAGGTCTTAGCTTTCAGCCACGCCTCCTGCAGGGGGCATAAATCCCCAAACTTGGAAGATGTGCTATTCTCTAATGGTCAGGGCCATCCTGCTGGATCAAGAGCTGAGCACACAAAGCTACCGACCTGGGAAAGCCCAGCAGTGAGCATGAACCACTTTTATTACAAAACGCCTTAGCAGTCATCTAGGACAGGGCTGTCAGCTCATCGTGGGAGAGGCTCAGACCATCTTCACCACCTGCAGTGGGAGTGCCAGAGGCATGGACTGAGGGTTCTGTTTAGCCATTAGGTTGAGTGCCAGTCCTTGCGAGGCCTCTGCTCTCCAGAGCCAGACGCGTCACCTATCTGTGCTTTTTCCTGCTGGGTTATGAGCCCAAGGGACTGGATCTGCCTCTGGCTGAAGACAGCAGGGCTACTCCTGCAGGGGCATCCTGTAGGAGGGATGCATGCCCAGCAGACTCCACAGGAGACTTTCAGCCTCCAGGAGGCCGGAGGCAGTAGACTGGGTCCTCTTCAGAAGGTAGAGGGCTCATTTCCTCCTTCTGTCATAGAGTGGGAGCTGGGTCTCCTGAACTGCCATCTCCTGCCTTGGGCGGGGTGGGGCGGGGCAGTGTATGTTTGACTTTTCCATACCATACCACACCCTGATGTCTGCATTAACTCCTGGGGGTGGTCCCAAGACTCTGATACAAGGGCTCTCACCAGATTGGCTTGGTCTATAATCATAATGGGACATTTGGCCACTCTGAGGTCCTAGGGGAAGCAGGCTGTAGTAGTCTGAGGCCTTGTCCTGAGCTAGGCAGAGCAAGAAGCAAGTGAGGGGGTCTCAACCCCTTTACCAGTGAGAAGAACTGTTCCAGTACAGATCACATGCAGTTGTGGAACCAGGCACAGTACGTCCCAGCAGCATGCCAGTTCTCTAGACCGCAGCAGCAACGGCAAGCAGCAGGAGGTCTATGGCCTGCGTGGGGACTCCCAGGCAGTCTAGCTCATCATGAGACCCTCTGAGCCTGTGGAACTGGCTGACTCAGAGCCAGCCTTGAGTTGCAAGCCCATGGGGTTGCACAGATCAAAGTCTTCAGCTACTGCTAGCTGCACACGGCCATTGAGGCCTTTCTTGCCCGGCTCCAGGAAGGCCACATGCTTGTGGACGCTGGCCTTGCGGCTGGGTGCATCTGGCGGTGTAGTGCTGAGCACCGAGGACTGTGCACTCAGCTCCTGGAGTGGACTGGATGCCCGGGGCCAGCAACGGTTGCGGCAGGCCCGCCGACAACAGCGACAGCAGCCACGACAGGGTGGTGCAAACAGGTAGAGCAGCACCAGCACCAGGCCCACGATACAGCCCAGCAGTGTGGTGAAGCCCGTGTTGAAAGCCTCCGGCTCGGGGCGAGGCTTATGTACACTCACATTGTACTCAAGCGTCTGGTTGTGGTGCAGGCGGGGCCCACTTGCCAGGCACACAAAGAGGCCTGCGTGCTGTTCTTGCACCCTGCCTATGGCTAAGCTGCCATCCGCCAACACAGCAATGCTGCCATCCTGGGAGCCTGGCGCGACCAGCAGCTCGTTTTTCGGGGAAACCCAGGCCACTCGTGCAGCAGGCACTGTGGTGTTGCAGAAGAGCCTCAGGGACTGGCCCACGTGTGTGTGCAGCTCTTCCTCGGGCAGCTCTAAGCCTGGAGCTGCAGCCACTGAGCAGTTCTTGAAGACCCGGCTGTGCTCGAAGAAGCGCACTCGGGATTCTGCCACCTTAAAGGCCAAGCATGTGTACTCACGTTCAAAGTCGTGCAGAGCACTTAGGCCCCGCTGGTGCCAGCGCCGGAGCAGGTGGTAGAGGCTGCAGTCGCAGGGCAGTGGGTTGTTGTGCAAGTAGAGCCGATTCTTGAGGAAAGTGGGCAGTGCAGCCAGTTCAGGGACGGAGACATGGCCCAGCCAGTTGGAGGAGAGGTCTAGAGTGCGTAGGCGGGTTAACCCCAGGCCGTGCAGGTGGTTGAAAGAGAAAGAGGAGAGTTCGTTGCAGCTGAGATAGAGGTGGCTGAGCATGCTCAGGCCCTGGAAAGCATCCAGGTCCAAGTGCATCAGGCGGTTATTGAACAGAAGTAACTTCTCCAGCTCCTCCAGTCCATCCAGGTCATAGGTACGGAGTCTCCTCAGCAGGTTAGAGGACAGATCGAGTATCCTCAGCCCACTGGCGTTAGTGAACACACCGCGGCCCAGGACATCCAACTTATTGTAGCCTAGGTACAAGGCACGCAGCCGGGAGAGGGGCGCCAGCCATCCTGGGTGCAGGCGTTTGAGTGCATTGTGGCTCAAATCAAGTTCTGCAGCAGTGGCAGGCAGTGCTGCCGGCAAGTCCTGTAACCCACGGCCCGCACAGCTCAACACATCGGCAGCACAGACACATTTATTGGGGCAGTTGTGGGGATCAGGGGGCAGAACACCCTCCAAATCTGAAGTGCCTGATCCAGCCCCCAACATGCACAGTAGTAGACCCAGTAGCACCAACCAGGCCATGGCAGTGACCACCAGAGAGGAGATGGGGACAGCTCAGTGCAGGTCAGTAGCTCCAAGACTCACCTACTTCTATACAGGCTGATCGTGGTTCCCTATGGCCCATTGCTTGAGAGGCACAATGCTGGCTCCACCTGCCCAGCCTGGCTTCTCCTGCTCTTCTGGTCTGGGGTTGTGAGGTGGGGCTGCAGCCCTTCTAGCTCCGCTAGCTTCTCCAAGAGCTTTCTGACTGGATCCTAAGTACTAGCTAGGAAATGACCGCTCAGGGGCGGGGACCCAAGTTCCCATTGGCTCCTGCTGTTAAGGGGTGGAGCAGCCATGTCCCTTGGCACTTGAGAAGCCAGTGTGACCAGCAGAGGGCTCCAGTGTCCCAGTTTGCTTGAATGGAAGCCTGACTTCCCTCTTGAAGAGCAGAAGGACTTAGGGGAGAATGTCTTCAGTTCTTGAAGGATTAGATTAGTGTATAATGGGGTAGGTGGAATCCTCACCCCTCCCCTTAGGTTTCCTTATTTGTGTGTACGTGGGTGCTCATGCAGAAGTCCGACAACTTGTGAGTGGTTTTTCTCCTATTCTGGGGAATCAGATTCAACTTGTCATATTTGGTAGCAAGCACCTTTCTCTTTAGACTGATATACAGGTCATGTGGGACCCAGAACTTGAAAGGGTTGGTAAGCAGTAAGGTGGGAAGAATGAAGGCATAATAATGAGACCCCTGGGGGGTCTCCTCTCCCCACATGGAGATAATTTCCATATAGGCTCAAAGCCTTCCTAACACCCATGCGCCCTCCCTATCCAG
Seq C2 exon
GACAGAGCAAGCCACATCTGTGCTCCTGGCTGATCCCTGCTTCCAGCTCCGCTCTATACGCTATCTCCTGGGGCAGCCAGAGCCCCTAGCACCTGGCTCCGCCTTGCCTGCCCCTGACCGGAAACGCTTCTCTCTACAGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.068
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF042167=FdhE=PU(23.9=53.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]