HsaINT0052585 @ hg19
Intron Retention
Gene
ENSG00000151914 | DST
Description
dystonin [Source:HGNC Symbol;Acc:1090]
Coordinates
chr6:56330876-56333797:-
Coord C1 exon
chr6:56333780-56333797
Coord A exon
chr6:56330994-56333779
Coord C2 exon
chr6:56330876-56330993
Length
2786 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
TTTCTTTCTTCACTGAACAGTTT
3' ss Score
8.11
Exon sequences
Seq C1 exon
TTCTTCCTGGGAAATCAG
Seq A exon
GTATAAACCAGTGGAATGTATTCTCAAGTTCCTGATGATTTTTTTTTAACTTTAATTCATAGTCATTAAAGCTTGCCATGGCCAATCTTTCCCATGCTGTCTCCCTAGCTACTACATTGTTGGTTGGCGTGGTGTTTCTGTAAACGCTATAAGGGTCCTTGATCCAGGATTCCTTTTTGCCTTGTGTCTCTCAGATGAGGAGATTACTTTTAAGCAAACCAGATAATGAATTGTAGCTTGGCTTGCTACAATGTTACGAATGCAATTTTTAATTCCCATTTTTTATAATATGAGCATATATTTTATGCTAGTACTCATTGGAACACAAATTTGATTCTCCACACATCTCTGTGTTAGGCTCATTGGTGTTTAACTGTTTAGGACATACGGTCTACAGTAGCTGAGAAGGATCAGCCTCAGGCAGTGACACAGGAAGACAGAGAGCCAAGAGGTCTCCTTGGCACTCAGCCACAAGTAACAAGTTCTCTCCAAAGAAGCTATTTGCCATTTGTTCAAAATCACCAATTTTGGGGCTTGGCATCTCTGAGTAGAAATGTTAACTCAGTAGGCTTTAAGTAATATTCCTTTTGAGGAAAGTTATCGCTATAATATATGCAGAATCTTAAAGTCACATTTTATGCCATCTTGATCGAATATTTATATTATTGGCACTTAAGTCAATATAAAATGTTTATGTTGACATTTAAGTCAGTATAACCTGTGTAGTGGCACTACATCATGATCAGAATTTTGAAACTAAGGAGATACTCTGTTTTGATTTAAACATGTTCATGAAGCTTTTATTTTATTTTATTTTATTTTACTTTGGAAAGAACCATGCTATCTATAGTATCTGACCATATTACATTAGATATGACTCTGCCACTCCATTTTAAAGCCATATTACATCTCAAGCTTCAAATTATCTATTACCTTTATTTATTGCAAGCAAATAATTTATTTAAAATAGAAATAGTTACTTGGAATAGATTTTTAAAACTTCCATTAGTTATACTATAATACTGAAATGTTACTTTTCCATTCTTGCTATTTTCGGAGTCAGCAAATGGGAGAGCATCTTTTATTTGCAGAGAGAATGAGAGAAATACCTCAAAAGGTTTTACTCACTGAAAGCACAGTCAGCAACATTAGTCTATTTTCTCTTGTCTTGTGATTTGGTTACTGGGAATATTTAGAGAAATTCTGAAGATGATGTTAGTTGTCTGGAGAATGCCTAATTAAAACAGAAAATTATTTGTATTCATTACACTTGAAATATCATCTCTATAAGGAACTTTTAGTTATTTCCTTATAACTTTTGTTTTGAGTATAATCTTGAACCAAAATCATCTAGTCCCATTATCTGGTTCCTTAAGGGTAATTTTCTTTAAATCCCCTCCTTTCCCTTTGCTTATTAGCGGCACCAATTTTTTTCTAACAAAATAAATTTACACTTTTATTTTTAAATTTTAATTAACATTTCAGGAAGAATTATAGGAAAGTTTAAGTCTCAATGTTTAAGGAAAAAAGATTTAGAAATAGTGGTTTTTAAAAGTTTGATGGAAAAACACATGAGTTCCTGCTGGTGCATTTTACATGCTTTCTAGGTCCTTCTGAGTTTTAGGATCCTGAGGGATTTGGTTGGTATTGTTTTTGGGTTTTCTTCTTGAAACTCAGTATTAAAACACTGAAAAGTAGCAGATTTTTTTCTACCTAGAGTTTTCTGTTTATCCATCATGAGCCCAAATAAAGTCACAATTGTATGTTACCTGCTTTACAAAGAAGCCATTTATGTTTAATTGACTGTTCATTTTGCTTTCTTGTCTGCTGGGATGACAACCGTGAAATTCAGTCTGGTAGTTTTTATGAGTTGGACATGAACCTATTAGAAATGATTTAAAGTATAAAATCATTTCTCACAGGCTTTCAAAACATAAACCTGTGATCAGAAACCTGGAATCTAGAAATTTATTCAGGACTTGCAGAATTTGTAGCATATCTACATTATTGGAGATCTATTGAAAGGGCAAGAAAAAGATGATTGCCTGTTAGTATCAACAGTTATGGTACAGACAACTATGAGAGAAACCTTTTAGATTTGGCAGCTGTATCATTAATAATGTGTCATTGGCTATTCTAATATTACAGTAATCTAAAATGGCATATTAATCCAGCCTTTAACAAATTGGTTTACCAGATCATTAGGGATGCAGAAATTTTAGTTGACTGTGAAATTTATATGAGTCATACTCATTTACTTTATTCTTTTTAAGTGAAAACTGCCCTTACAGAAAAGAAAATGAGTTTATAAAGATTTCTCACAGAGTTCAGTGGAAAACGGTTTTACTGTAAGAGAGAGTTTAATGAAGAAGAATCAAAGCTTATTAAATTTTTCTTAGAATCATTTTATTTTGGATAAGCCCTGGGCAAGTGGGCCAGTGCTTACTTTCATGGCTATGTTTAATTCCTAGAAACATTTTAAAATTACTGCCTTACTAATATTGTTTCTGTCATAAGAAAGAAAAATAATTTTTAGACCAAAGCTTTGGTAGTATACTTGATAACCTTTGTAATCTTTTTTTTTTCAAACTGTTTCCTTTGGGCTAAATCAGCATGCAGCCGTCTAACACAAATCATTACAAACCCCCTTTTCTGAGATTTTACTAATCGCTATGAACTAAGCAAGAAATTAAAGTCGGTTGCTTTAGCTACTGCAAATTGCACATCATCCTGTAGTTTAGAATTATTATTGACAACTAGAGGTTCTTTCTTTCTTCACTGAACAG
Seq C2 exon
TTTGGAGACTCCCAGCAACTGCGACTGGTCCGGATCCTGCGGAGTACTGTGATGGTTCGTGTTGGAGGTGGATGGATGGCACTTGATGAGTTCTTAGTGAAAAATGATCCTTGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151914-DST:NM_015548:79
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(6.3=100)
A:
NA
C2:
PF0218712=GAS2=FE(49.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)