DreINT0011434 @ danRer10
Intron Retention
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1571337-1573992:+
Coord C1 exon
chr13:1571337-1571453
Coord A exon
chr13:1571454-1573874
Coord C2 exon
chr13:1573875-1573992
Length
2421 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
3' ss Seq
GTTTGTGTGTGCGTGTTCAGTTC
3' ss Score
7.89
Exon sequences
Seq C1 exon
TTTGGTCTGGTTCACTGCTTACATGACCCCTTAATCGCCGACGAGACTATAACAAACAGGGACAATCAAAATCTAACCCCACATCTACACGTTGCCGTTTTGGAAAGCTGTATCCTG
Seq A exon
GTAAACCGTTTTTAAAAAGCCATTTGTTGTGACTATTTCTCTTGATCATGCTTCAAAATTCATCCCAATCACCAAATTCACCAATGGTATCGATTCATCACTTCAAGAGTAAAGGGCTTGAGGAGCTCCATGTCCAATCAGAGAGTCGCTTCCAGCCATTTTTCCATACTGTGTGTCATTGGAGTGCATCCTCTTTGAGAATGGTAGTTTGTAGTTCTAGACAAGTGCAACGTCTGTATGTACTGTTGGCTTGTGGAAAAAGTTCTCCTACGGTATGATTTCTTTTCTTGAACAGAAAGCATGAGGCCATCATTTTTTGTGCTGTGAAATCAGTGTGCCTTGGCCGAATCCAACTGGCAGCAATCATTTGGGCTTGGTTTCTTTAGCTCCTTCCTTTGGCATGTAGGAAGGCAGTAGAGTTATGCCTTATTGTTCTCCTATGGTAATACCCAAATTACAGTCTTTAAAATTAAGCCAATTTAGGGGTGCAGCAGCTTGTCAGGGGAGTGGAAACCTTCATTATTTACTCATAGACAATCATAGCAATCACTATTACTACTGTAATGTACAAATATGAACGTTATAGTGGTAAATAAGATGCAGATTTGTAAATTTAAAGGGTTGTATCTCAGTTATAAGCTTGTGTTTCCCCTAAAACACGTTTGGACTTTTTCTTAGTGTATATCACAGACATTGGATGCACTTCTAGCGCACTCTAGTGGACACTGATCACAGTACTGTTCACTGTAAAGTGCACTTTGAGTTTCAGACGAGAAAAAACATACAGTGCTCAGCATAAATGAGTATTTTGAGAATATTTTAATCCATTTCTCTGTCAATATAGCTCGTATGTTTTGGGGCATTTGAACAAAATAGATTTATTACATGTAAATATTTATTAAAATAATATTTTAGTCACCGAAGATCTTTAGAAGTAGAAAGATAATACATTTAAATTCATGTGAAATATTGGAAAAAATTACAAACCTTAAAATTTCAACCAAATTTAATTATTTTTTTTGTTTCTCTTGAGTTTCGCTCTTTTTTTATCGTTTTATTTAATATATATAAATTTGTATTTAGTAATTTTGCACTATTTTCATACGTTATTTTATTAGATTAGCTCCAGATTTGGCTTTCAGTTCAATTCAATTCGCTCATTCTGTACGCCTGAATAATTTTGAAACTTTCTGTAAGCTAGAGATTGTGAACCTGGGTTTTAAAATGGATCCTGAACTAAAGCTCGAGAGCCAAATTCGGTCTGTTGTTCGCTCTAGCTTCTTTCACTTAAGACAACTGGCCAAAATTAAGCACAGTTTATCACACAAGCAATTTGAAACAGTAATCCATGCTTTATAACCCCCCGCTTGGACTACTGCAATGCTCTTTATTTTAGGATGAGTCTGCCTTCTATTTCTCGACTGCAACTTGTTCAGAATGCAGCTGCGCGTCTTTTAACTGGCACACGCAAGTACGAGCACATCACCCCGGTTTATCTTCTCTTCACTGGCTGCCCGTGCATTTCAGGATCCATTTAAGTTTGTCTGAATGGTGCTGCACCATATCTGTTGTATATTAGACGAGCCTCTTCCATCACTGTTTTTAAATCTCTTCTTAAAACCCACATGTTCAATTTGGCTGTTAGCACAGCGCGAGATGTTGACATTTTATGTTTATTTGTTTGTATTTTAAAGTTTGTGCTGCGCTTTGTTTTACTCTCAATTCTCAGCACTTTGGTCAACTGTGTTGTTTTAAAGTGCTTTATGAATAAAACTGAATTGAATTCTGGACCGTTTTCATACGTTATGTTGTTAGATCAGCTCTAGATTTGGCTTCAGTACTGGCTAATCTAATGTATATGCACAAATATAATATTGTAAAGCTTCCTATAGAAACATATGAATTTAAATAAGAGATTTAGGAGGGGTGAACTCAAATATGTTGAGCACTGTATGTCTGAAAAATGTTTAACAACTCACATGATGAGTTGAGACATGCTTATCTCTATATTCTGGTTTATTAATGCAATGTTTTGCACTAGAATTGCATCAGCCGAAATGCTTGCTGCACCTTTAATGATAAAAATGAATGGCACAAACACACTCATGAACGATTCACAATCAGCCACAAATGAAGCCAGTTGGATTGAGCATCCATTTCATGTCTTCTGGAATGAAACCAATGTCGTGTTCCAATTAAAACAGTTTTGTCAATGTTAAACCACCCAGCAGAGCAACAGGAGGAAACCAGACAATACAGCCAAGCATCATCTGACTGGAAGTGTAATGTTGAGATTTGACGCACTGCTTCTAACACACGTTTGCTGGCTAGCTTTCACGGAGAGGTTTCTGATGTTGCTCTGCTGTGTGTCCGTCTGTATTTTGTGTCTATAAATGACTGTGTTTGTGTGTGCGTGTTCAG
Seq C2 exon
TTCGGAGATTCCCAGCAGCTACGTCTGGTGCGGATCCTGCGCAGTACAGTGATGGTGCGGGTGGGTGGAGGCTGGATGGCCCTGGACGAGTTCCTGGTGAAAAATGACCCGTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858:ENSDART00000165987:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(22.4=28.2),PF0218712=GAS2=PU(17.3=23.1)
A:
NA
C2:
PF0218712=GAS2=FE(75.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]