RnoINT0088219 @ rn6
Intron Retention
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141050183-141054816:-
Coord C1 exon
chr5:141054742-141054816
Coord A exon
chr5:141050301-141054741
Coord C2 exon
chr5:141050183-141050300
Length
4441 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
GAGTATCCCCTTGATTCCAGTTT
3' ss Score
3.73
Exon sequences
Seq C1 exon
GTGACAAGACAAGTGGCTCAGTGCAAGTGTGCGAAAAGATTCCAAGTGGAGCAGATTGGCGAGAATAAATATCGG
Seq A exon
GTAAGCAAGAAAAGCCAACCATTCGTGGAGGTCATTTCCTCCTGTGTCATCCTGGCGCACAGTACAGCAGCTCCTGCTGCCTCCAGAGGCTCAGAACCATGGGCCTTCATCCGTAGGTGCCCAGTGCCATGCCCTGTGTAGTTCCATCTGGCTTATAGGTGACATGGTAGAAGACATTTTATAGCCCTCATCTCACTGCTGAGCAAAGACTTTAGGGGCATGAAGGTAAGGTGCCTTTAGAAACGGTTTTATTAGAGGACTTGGGAGGCAGAGTCTGGTATTTTTCCTTTAACCCCAGCACTTGGGAGGCAAAAGCAGAAGAACCTTTGCAAATCCAAGACCAACTCTACTTAGTGAGCTTGTAGTTAACCAAGGCCTATCACAAAAATGTCTCAGATTTTTTTTAAAAAGCAGGAATCAGGATGCTGGGGATGGTTCCGTATGTAATGAATGGTGCTTGCCACCAAGTCTGACAACCTGAGTTCAAGTCCTAGAGCCCCTGTTGGTAAAAAAGGAAACATACCCCAAAATTCTCCCCTTGAGTGTTTGTGCACATACATATTTTCTTTTGGGTTTTTTGTTTGTTTTGTTTGATTTTGGTTTTGTTGTTTGTTTTGGGGGGGGGGCGTGTTGGGAGTTTTAAATTCTGTTTTAATTTTTTTCCATTTAAAAAAAGAGTGGTTTATCCACAAGAACTGGTCATTGTGAGCCTAAATGGTTCCCATGCTTATAGAAGAGTATGTGTCAAAGCCCCAACATGTTGGTGTTCCTGTGCTGAGCTGGGCTCCAGCTGGGACCTACATGCACTGGAGAGCAGGTTCAATGATCTTCCCTGGGAAGACTTGTTAAGTATGACCAGAAATAACAGGAAACTCAGATTCTCAGATTCTAGCTCTTCTTGGGACTAGAGTCAGGGATGTAGTAAAGACATAAACCAGGACTCCTAAACTATATTCATCAGCTTGTCACGGGACCCTGAAATTTTAAGAAGAAACTCTGTAATTAGCAAGGAATATTTAAAGATGGCCATCTTGTGTTGGAGCATAGGAATCTCCAGGTTTCATTAGGAACTCGAGACTATTTCTGGGCTCAAGCCGTAGCTCAGTAAGGAAGTGCATGCATAGCGTGTATAAAACCCTGGGCTTAAGACTAGCACCGAGGCAGCAGGTCCTCCGCGTACCCCAAATCCATGTTCGTAGCTGAAGAGGGCAGGGTGATCCTGCCTCTTACCAACCAGAGCCCTTACTAAGCTCCAGGTAGTTCTGTGTTCATGCTGGGTTTTTGTTTTCTTGTGTTTGTTTATGAGTGAGATGGGTTGACAAAAGAAGCACAAGATGGAGAATTCAGGCTTTGTAAGACCATCATCCCAGTAAGAATGTGGTCTGTGTGAACTTAGACTAAGAATGTGATAAAATTGTTGTTTCTTAGTTTTAATTTGACAAAAATGTTCTCTTTTTTCCCTGCATCCTCTATTCTTATTGTCTATAGTTCTTCCTCGGCAATCAGGTACAGTGTGCCTTGCAATGTCCTTCTTGGTGGATGTGGTCTTTGTAGCTCATGTTGCCTGTTCTTTGCTTTGGGGAAAGGACACAATTGGAAGCATGCCTGGGTCACATCTGGTTGTCTTACCAAGTGGAGAAACTACTAGCAGACTTTTATTACAAAGCTGTCTTATCAGCAAAAAGATACAGTTTTGTATTATAAAAAAAACCAACAAAATGAAATTTGCCATTCCAAATTGTGCTAGCTAAGGCGATGATGTCACACGGTACTGAGTTATAACTGTTATGACTCAAGAGAAAATCGAGGCTCTGATATCAGCCCATTTCACCTGGAAAGACACATCTTTATTCGGGGTCAGAATACCATTGGCATAATTCTGTTTCATCACCAGTCTTTTAATAGTTAATACAAATTTTGTAATGTATACTTGAGTCAGAAACCCTGAACAATCTTAATATTATCCAAGTACTAACTTAATAGATAGAGGTATTTACAAAGATGCCTGAGAAGTACAGACAGCATATTGATTTCTGCCTAACACTTTCAGAATATAACAGCCAGTCAAAATGAAATGTGCTCAAATTAGAGGGAAGTCTTGACTCCACTTGGTAACTCTAACCTTTGAGATCTCTTGAGGGTTCTTGGGTGCTGTCTCTCAAATATAGAAGAAAGTTGCATGAGTAAAATCAATCTGTCTGTCAGGAGGTTAGAAACGCAGAGTTAATTGAAGTCCTCAATCAGTGTTAAGCCTTAGCTACTTCAGTAATAACCGAGGTAATATTCTGGGCCAATGGGAAGAACAAAAGCTAGGAAAACATAAAGCTGAGGACAGTCAAGTTGGCTTTAAGTAAACCACCACCAGCTGTGCATGGTACCTTCCTCACACCCGTGCTACTTGGGAGGCAAGTTTGAAGCCACCTTTGGAAACTTAACAAGTCCCTGTGTTAATTTTTGAAAATAAAAATAAAAAGGCTAATAGTGTATCTTAGTGATCGAGTGCTTGCTTGACACATCCCTAGAGTCTGTTCCCAATATTACAACTGTTCAATGATGATGACTATAGTCAAGTGCCCAGCATGCCTACCTCCTGATGACTGCACTTCCTGGGGTCCCTTTGATGGGGCACTAACACCCTCCTCCACTGCTCCATTAACCTGGGGAAGACTTGATGAATTATTCTAATAGTGTGAGTAGAATTGTTAAGTCCATTTTTTATATGTAGTGTTGGAGGCCTCAGAAATCATATGTCACACTCATGCAGCTAATGTCCTAAGAACCTAGGTTCCTGTGAGCAAAGGGAACAATGGCTGTCAAAACTCTGCCTCAGTTCTCTGTGGCTCTTCCACAGCCTAAGCTATGGAGCCCCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCTGGAGTGCCTCCTTTGGATTTCTGCAGCTCAATGAAAACATAGTAGAATCTTTCAGACAGCTTTGGGGAGATATGAAGGAAAAGCAACCATAAGATCAGTAGATTACAAACAGTAAGGTGTGGTATTCTAAGAAAGTAACCTAGACCACTCTTTCCTTTTTGACTCTGGGAGACACACAGGCGCATAGCCTTTCTATGTTTCACCTATCCAGAGAAAACCCAAAATAGTGACTCAGGTCACTAGTGACGCACCAGTCATCCCCAGAATCTGTTTCCTCCCTCCAGGCAGGGAGTAGCTTCCTTCCCAGAAAGTTCCTTTCCTTACAGCTGGGAGAAGTGCTAATACCGCTCCACCGTGTGTCAGTCTGGCCACGTTGTGTAGACATGTAAGTGCTGTAGGAGACAGATCGTGTAAAGCTGTTGAATTTTTGAAGTGAATGGAAAGGGAAGAGGAAGCACCTTCCAGACTTCTTCCTAGGCACACAGTGCGTCTGAGTCAGGTCAGGAAGAAATAACCAATGTTTACCATTACTTAGGAGGACAACTGTGTATCCTCCTCAGACATCCTTTCTTGCAAATCCAGTTTTTCTCCCTGTTTCAAAGTTAAGATTCTCCTATAACTTTGAAAATCCTAATTAAATGGTTAAGTCCTTTTTACCTCCCTGCCCCAACCATTCTTCTTAATAACTTTAGGCGTTCCATTTCTTTAATGTCTGGTTTGAGTTTGTTTTGGAATCTTGGTGTGTTTCTCTGTCGTAGCCTCCTCATTTGGAAAGGACAGTTTATACAAAGGGAAGCTCCATCTGTCAAGGTAGAACTAGGAAGTGGGCAGTTAGGACTAGAGACAACAAAAAGCTCATCTTATTTGTCCTAAGGTCCAGAATACTTATTGAACTGTTTCTAATCATGATAAGAGATTAAAATTTCTGTTTCTTCAACTAAATTTTAATTCTGTCTAATCATTTGTTCACTTGACTTTTCCTTTTGGTGACATCACAATCATTTAGGGGTACTTCTAAGGACCGGATGAAGAGACTCACAATTTTCCCTAAGCTTGTAAAGCTAGGAATAAGGATGCTTCCTTCGCAAGAGTTTCTTTAATGCTTTAGTGTTCGCTAGGATCCATTTAACCCTCCAGCACACTGTATTCAGAAGTTGAGCCCTCTCTTTAAGGAGATAAACATAGCAGTGCAGCCTGCTCCCTGGGGTGGAATCTTAGCAGAATCCAAGTGAACAAATCCAAGCCCATCTTCCCTCCTTTACCCTTGGTACAGGAGTCAGGGTGTGGCCACTGGGAGCTAACTTTACCCCAGCAGAAAGATTTTACAACATTGCTTCATAGCTTAGTCTTTCTGCTTTTCTATTTGCTAACGTTTTTGTGATAGTGTAAAATACAAAATTGAGTTCAGAACTCTTCCTAATATTATGTAATTCCTGAATACAGTCTGCTTTCTAGGGGTTTGGGGTTATAAGCGCTAAGGTGCTCTCATTAACTGAGTATCCCCTTGATTCCAG
Seq C2 exon
TTTGGAGATTCTCAGCAGTTGCGGCTGGTCCGTATTCTGCGCAGCACTGTGATGGTCCGCGTTGGTGGAGGATGGATGGCCCTGGATGAGTTTCTAGTGAAAAACGATCCCTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047:ENSRNOT00000045400:88
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(32.9=100)
A:
NA
C2:
PF0218712=GAS2=FE(53.4=100)
Main Inclusion Isoform:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]