BtaINT0088462 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107195616-107196843:-
Coord C1 exon
chr3:107196769-107196843
Coord A exon
chr3:107195634-107196768
Coord C2 exon
chr3:107195616-107195633
Length
1135 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
TTACTTTTAACTGTCTATAGTTC
3' ss Score
6.24
Exon sequences
Seq C1 exon
GTCACAAGACAAGTGGCTCAGTGCAAATGTGCAAAAAGGTTTCAGGTGGAGCAGATTGGAGAGAATAAATACCGG
Seq A exon
GTAAGAAAGAGAAAACCAGTCCTTTGTGGTGGTCGTTCCTCCTGTGTGGCCCTTACAGGTGAAAGAGCCTGACACACGACAGATGGGTGACCCCAACTTCCCGCTCCCAAGGCTTGGAGGACCGGAGCCAGTGGGACTTGACATGCAGTGTCTGGCCCTCATCTTTGCAGGTGTCAAGTGTCCTGTGGGCTAAGATTCAGAGCCCCGCATAGTTGCATCTGGAAAATAGTGCCCTATTTGGTCCACAGTTGCTTGTATGAGATCCAATAGAGGAGACATTTCAGAGCCCTCTCTTCACTACTGAACAGGTCTTTGTGGGCGCGGAGGCACCTTTATCATAAGATAAGGAAACAGCTATCTAATGACTGGCCATTGCCCCCAAGGAGCTGGTTGTCATGAGCCCATATGGCTCACAGGCTCGGGGCTAGAAGAGCTGTGTCCAGGCCCCACGGGACTCTCAGCCTGCTCAGTAGTCTTCCCCAGAAAGCCATGCTGAGTAAGGCCATGAATGACAGTGCATTTTCTCTAATGGCTGTGTTTTAGCTTCGTTTGGGGCCAGGCGGGGACCCTTTAAGCATCTATGACAGGACTCCTAAAATGTACTCAGCAGCATGTCGGGATTCTCTAAGGTCCTAAGGTAGATCTAGGATTGGCAAAGAGGATTTAGGTGGCCAATTCAGATAGAGTGACATGCAGCCAGTTAGGAACAGGAAAATGAGATTCATGGGCATGTCAAAACTGTCTTCAAGGTACAGCAGAGCCACCCAGTGCTGCTCTGAGCTGGGGAGCAGTGTCGCGTGGCTCTGTGTAGATCCAGCCCAAGTTTTGGGTTATAATAAGGCTCCAAGCAGTCTTACCCTGGTCTGTTGAGTTTTGTTTTGTTTTAATTACCTGTGAGAGGGATGAATTAACAGGAGCAATATAGAGTGCAAAAGTTAGGTCTTCTTAGCTTGTAAAACCTCATCCCTGAGTCTGAAGCTGGATAAGAATATGGTCAGTATGTGTTGTTCTTCTTGAAACTGTTAACATGATTACATGATTTTCATTCCTTAGTGTTAATTTGACAAAATGTTCTCTGTTTTGTTTTGTTTTTTTTCTTCCATTTCCTCCATCCTTTACTTTTAACTGTCTATAG
Seq C2 exon
TTCTTCCTCGGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024:ENSBTAT00000033270:93
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(30.4=100)
A:
NA
C2:
PF0218712=GAS2=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]