MmuINT0094327 @ mm9
Intron Retention
Gene
ENSMUSG00000028649 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123038153-123042590:-
Coord C1 exon
chr4:123042516-123042590
Coord A exon
chr4:123038271-123042515
Coord C2 exon
chr4:123038153-123038270
Length
4245 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
GGGTTTCCCCTTGATTCCAGTTT
3' ss Score
5.3
Exon sequences
Seq C1 exon
GTCACAAGACAAGTGGCTCAGTGCAAGTGTGCAAAAAGATTCCAAGTGGAACAGATTGGAGAGAATAAATACCGG
Seq A exon
GTAAGGAAGAGAAAAGCCAACCATTTGTGGAGGTCATTGCCTCCGGGGTCATCCTGACACACAGCAGAGCAGCTCATGCTGCCTGTTCCCTCCTGCTGCCTCCAGAGGCCCAGAACCCAGGCCTTCATCCCTAGGTGTCAAGTTTCATGCCCTGTGTAGTTCCATCTGAAAAGCTACCATTATTACCCAGGTAGACTGTAGCTTATAGTTGACATGGTAGAAAATATTTCATAGCCCTCATCTCACTGCTGAGCAAAACCTTAGGTGCCTTTAGAAACAGTTTTATTAAAGGACTTGTGAAGCAGAGTCTGAGATTCTTCCTGTAATCCCAGAACTTGGGAGGCAAAGGCAGAAGCAGAAGCACCATTGCAAGTTCAAGACCAACTCTACATAGTGAGTCGCAGCTAACCAAGGCCATATCACAAAAATGTCTCAGATATTTTTAAAAAGCATGGATCAGGATGCTGGGAATGGTTCAGTATATAAAGGTGCTTGCCACCAAGCCTGACAACCTGAGTTCAAGTCCTAAAGGGGAAACACGCACCCCAAAATTGTCCTCTGGTGTGTTTGTGCACATATACATTTTCTTTTTTGTTGTTGTTGTTTTGTTTTTTGGGCTTTTTGTTCTGTTTTAATTTTTTTCCATTAAAAAAAAAAGAGTGATGGTTTATCCACAAGAACTGGTCATTGTGAGCCTACTGGCTCCCATGCTAATAGAAGACGATGTGTGAAAGCCCCCAACACATAGCTAGTGTTGCTGTGCTGAGTTAGGCTACAACTGGAACCTACATGCCCTGGAGAGCCGGGCTCAGTGATCTTCCCTGGAAAGACTTGTTGGGTATAATCAGAAGTAACAGGAAACTATGCTTAAATGTTAGCATCTCTTAGGACTAGAGTCAGGGATGTAGTAGAGACATAAACCAGGACTCCTATATGCATCAGCTTGTCAAGGGACCCTGAAATTTTAAGGAAAAAAAAAAAACAACAAAAAAAAAAAACCTCTGGTTGGCAAAGAATATTTAGATGGCCGTTTTCAGGCTTTGTAAGATCATTGTCCTGTGGCAGATGCCCAGGAAAAATGTGGTCTGTGTTGTGTGTACTTAGATTGGTAATGTGATGAAATCGCTGTTTTTTTAGTTTTAATTTGACAAAAATGTTCTCTTTTTTTCCCTGCATCCTTTACTCTTACTGTCTATAGTTCTTCCTCGGCAATCAGGTACAGTGTGCCTTGCAATGTCCTTCTTGGTGGATGTGGTCTTTATAGCTGGTGTTGCCTGATCTTTGCTTTGGGGAAAGGACACAACTGGAAGCATGCCTGGGTCACATTGGGTTGTCTTGCCAAGTGGAGAAACTACTAGCAGACTTTTATTACAAAGCTATCTTAACAGCAAAAAGATACAGCTTTGTAATTTTAAAACGCCAACAATGAAATTTTCCATTCCAAATTGGGCTAGCTAAAGGCAATGAGCTATAACTGTACTGAGTTATAACTGTTATGACTCAGGGAAAATTGAGGCTCTGACATCAGCCCATTTCACCTGTGAAGACACAGTCTTACACTTCCGTATTCGGGGTCAAAAATACCATTGGCACGGTTCTGTTTCATTACCAGTCTTTTAATAGTTAATAGAAATGTTGTAATATATACTTGAGTCAGAATCCCTAAATAACCTTAATATTATCTAAGAACTAACTTAATAGATACAGGTATTTATAAAGAGGTCTGAGATGTACAGAAAACATAATTGACTTCTGCCTAACATTTTAAGATTATAGTCAACCGGTCAAAATGAGATGCGCTTCAATTAGAGGGAAGTCTAGACTCCACTTGGCAACTCTAACCTTGGAGATCTCTTGAGGGTTCTTGGGTGCTGTCTCTCAGATGTGAAAGGAAGTTGCATGAGTAAAATCAATCTGTCTATCAGGAAGTTAGAAACACGAAGAGTTAATCTGAAATCCTCAATCAATGTTAAATTTTAGCTACTCCAATAATTACTAACTACAGTAATATTCTGGGCCAGTGGGAAGAACAAAGGCTAGAAAAATGTAAAGCTGAGAACAGTCAAGTTGGCTTTAAGTAAACCATCACAAGCTATACATGATACCTCCCTCAGACCTATGCTCCTAGCTACTCGGGAGGCAAGTTTGAAACCACCTCTGGAAACTTAACAAGTCCCTGTTTGAATCTTTGAAAATAAAAGGGTTAATAGTGTATCTTAGTGATCGAGCACTTGCACTGCGCATCCATAGAGTCTGCTCTCAATACTACGAGACTAGTCAGTGGTGATTGTAGTCAAGTGCCCAGCATGCCTCCTCCCTTCGATGACTGTACCTACTGGGGTCCCTTTAATGGGGCACTAACACCCTCCTCCACTGCTCCATTGACCCGGGGAGGATTTGATGAATCATTCTAATACTGTGAGTAGAATTATGAAGTCCATTTTGTATATGTAGTATTGGAGGCCTGGGGGGCGGATCACAGGTCACACTCATACAGCTAATGTCCTTAGACCCTCAGTTCCTGTGAGAGAAAGAAACGGTGGCATGAAAACTCTGCCTCTGAGTTCTCTGGCTCTCCCACAGCCTCTAAGCTAAGTCTCACTACCTGAAGTGCCACCTTGGATTTCTGCAGCTCAACACAAACAATTTAGAATCCTTCAGACAGCTGTGGGGTGATATTAAGGAAAACAACCATGAGATCAGTGGATAGCAAGCTGTAGGGTGTAGTATTCTAAGAAAAAAGTAACCTTCCCTTCTTGACCCTGGGAAGCATGCCGGTGCATAGCTTTCTGTTCCTTAGCTATCCAGAGAAGACCCAGACTCGTGCCTGAGGTCACCTGTGGTCACCTGAGGTCACCTGAGGCCCATCAGTCATCCCCAGAACCTGTTTTCTCCCCCCAAGGCAGGGACGAGCTTCCTTCTCAGAAAGTCTCTTTCCATGCAGCTGGAGAAGGGTTGACACTGCTCCACTGGTGTCAGTCTGGCCACTCTGTGTGCACATTTAAGTGCTGTATGAGACAATGGTGTGAGACTATTTAACTTTTGAAGTAATTGGGAAGGGAAGAGAAAGCACCTTCCAGACTTCTTCCAGTGCACACAGTGCCTACGGAGAAGGACAGCTGTATGTCCTCCTCAAACATCCTTTCTTGCAATTTCAGGTTTTTTCCCTGTTTCAAAGTTATGACTCTCCTATAACTTTGAAAATCCTAATTAAGAGGTTAAGTCCTTCTCTTTACCTCCCCACCCCCAACATTCTCCTTAAATAACCTTAGGAATCCATTTCTTTAATGCTTGGGTTGGTGTTTGTTTTGGAATCTTGGTTTGCTTCTCTTTTGTTGCCTCTTCATTTTGGGGAAAGGACAATTTATACAAAGGGAAGCTCCAACTGTTAAGGTTAACTGGGAATAGGCAGTAGGAACAGAGACAATAAAAGCTCATCATATTTGTTCTAAGGTCCAGAATAATTATTGAACCGTTTCTAATCATGATAAGAGATTAAATTTCTGTTTCTTCAACTAAACTTTTAATTCTATCTAATCGTGTGTTCAGCTTGACTTTTTCCCTTGGTGACATCACAGTCAGAACATTTAGGGTGTGCTTGTAAGGACCGGACGGACGAAGAGACTCCATTCTTCCTAAGCTTGTGAAGCTCGGAATGAGGACGCTTCGCACGAGTTTCTCTAACGCTTGACTTAGTCTTCACTGGGGTCCTCTTAACTCTCCAGCACACTGTATTCAGAAGGTGACCCCTTCTTTAAGGAGATAAACATAGCCGGGCAGAGGTGCCGCACGCCCTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGCCCGAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAAAAACAAAAAGGAGATAAACATCATAAGACTGCAGTGCTCACTTGGGCAGGGTCTTCAGAAGACTCCAAGTGAACAAATCAAACCCATCTTTCCTCCTTTACCCTTGGGACAGGAGTCAGAGTGTGGCCGTTGGGAGCTAACTTTACCCCAGCAGAAAGATTTTACAACATTGCTTCTTAGCTTAATCTTTCTGCTTTTCTACTTGCTAACCTTTTTATGACAATGTAAAAATATAAAATCAAGTTCAGAATTCTTCCCACTATCACGTCATTCCTGAATACAGTCTGCTTTCTAGGGGACTGGGGTTGTAAGTGTACATTAAGGTGTTCTCGCTAACTGGGTTTCCCCTTGATTCCAG
Seq C2 exon
TTTGGAGATTCTCAGCAGTTGCGGCTGGTCCGTATTCTGCGCAGCACTGTGATGGTCCGAGTTGGTGGAGGATGGATGGCCCTGGACGAGTTTCTAGTGAAAAATGACCCCTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649-Macf1:NM_009600:89
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(30.4=100)
A:
NA
C2:
PF0218712=GAS2=FE(53.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: