GgaINT1000551 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5400708-5403172:+
Coord C1 exon
chr23:5400708-5400782
Coord A exon
chr23:5400783-5403054
Coord C2 exon
chr23:5403055-5403172
Length
2272 bp
Sequences
Splice sites
5' ss Seq
CGGGTAATG
5' ss Score
6.86
3' ss Seq
CCCATTTCTCTGCTCTGCAGTTC
3' ss Score
8.23
Exon sequences
Seq C1 exon
GTCACCAGGCAAGTGGCCCAGTGCAAGTGTGCCAAGAGGTTTCAAGTGGAGCAGATCGGCGAGAACAAATACCGG
Seq A exon
GTAATGCAGAGGGCACCGCGCGCCCCCGCGTTCCCTGCAGGGAGGGGACCCCCACGGGCAGCCCCAGGGACCCCAGGGTGATGAGGGGCTTCGTGCCCTGGGACCGCACGCCCTGGGGAGGCGGTGCTGGCCCGGCGCTGCCCAGGCCCAGGGTGTGCCTGTGCAGGAGAGCACAACAGTGGCAGTGTTCTGGGGCGGGCAGCTGCTCAAGCGCAGCATTCAGTGCCGCCCGCAGCCGCCCTTGAAGTTTTCCTCGTGGATGAGTGTACCTTACGCCCGTGTTTTTCTTAGCTCGTTCCTGAAGAAGGAGAATGATTTCCTTACAGGATCTCTTTGTAACAGACTCCGGTGTTTATGTTTCAAATCACTCACCGAGGTGAAGCTCGGCACTTAGCTGGCAGCCAGCTGCCCGGTTTCCTGCGCAGTGCTCGGGGCTCACAGCTCGCCGCTGCCTCAGAGCCCCATAGCAGAACCCCATTCCTAACTCCCCGCAGTTAACAGTTGTGGTGATGATTGCACTGTTAATCCCATAAAATGTTTTTCTTGTTTTTCTTTCCCCTCCTCCCGCTCTCGACTTTCCTCCCGCTCCCCAACCCTTCTCACTCCACTTCTCTCCTCCGTAGTTCTTCCTCGGCAATCAGGTACAGTTTGCCTTGCGATGCTCCCTCACCTCTTGTTAGTGGTTGTAGCTCGTGTGTCCGTGGTGCTTTGTCCTTTGGGAGGATGCAATCTGTAGAGTGCTGCTTGGAGAGCTTTGTCCCACCGCTGCGCAGAGCCTGCTGCAGGGGAGCGCCATCCAAAACAATCTGGGCAGGAAGAAGGGAAAAGAATGGGAAAAAAATCAGGAATTGACTGAAAGGGAGGGATTTCTGCCTCCCCGCTCCTTCCTCGGTGCCCTGGAGATGTCAGTGGGCTGCGGGGACAAACTCATGGGGTGACACATGAGGGCTGTACCAGGCTCTGCGCTCGGGTCACCGTCACCATGGAATGGAAATGCTGCGTCCACATGTTTAATCCCATGGGTAATGATAACTAAACCTCATCCTGCTGCACCCGCTGAGTAACTCCTGGTGGGAGCAGGGCTTGTAGGAACCCACTGTCAGTGCGTCCCTCTGTGGGGAGTGAGAGCAGAGCGGGGTCGGTGTGCCAGCTCACATCCACCTGCTGTCAGTGGGACGGAGCAGCACAAAGCACTGCCGTGTGCCCACTGCCCCGCACACAGAAGGGCACGTCTTCTATGGGGGGGTGGTGCCCTACCAAAAACGTTCCCCAGAGGAGAGAAGCCTGGCTTTCCAAATTGGACGGATGGCTTTGTGTTAGGCAGTGATTATAGAGACGTTCTCAATGGTGACTGAAAAATAATCTCAACGTGACAGTGGAAATGAGAACTCGCCCATCCCTGCCTTTCTCTGCCGGTTTTGGGGAACCCCAAACTCTTCTTTATTATTGCATTCCTGTCCATCCAAGGGAAAATCCTCCTGGTTTTTTTTTTTTTTTTTTCCTTTTTTCACTCGTCCTGAAGGTGGTTTCCCTTTCCAAGAGTGCTTCCCCCACCCCTTGGAGCGGTGCTGTGTGGGACAGGCAGAGCAGTGCAGGACGCAGCCTGGGCTCGGGGCCGGGGCTTCTGGCTGGGGGGCACTGATTGAGGAATGGAGGGCGTTTCAAATCACTAATGAACATCGCAATCACTAATCACCATTCCTGCGGGATTCCTGCCCGGATTCCCCTCACTGCACTCACTGAAATCCTGGCGGGGCGGTGGCAGAGGGGCTTTTTCTGCTGCTGGGGCCAAGGCTGAGGCTCGGGGTGTCTCTGCCTTCAGACTGGAGAGGTTTCTCACACGGTGGTGGCACAGCACTGCTTTGCTGGTTCACCGACCTGCCCTGCCTTCTCTTTTCCAAGTGGGCTGCACCAGCAGCATCAGTGCATTGACAGCCTGTTTCCTTCAGAACCAGAAAGAAAACCCACGATTCTGGCTGCGAAAATCCATCCAAGGGCCAAATTCCAAATGCTCATTTGCTTCTTTAAAACTAAAGGATTTTGATAGCTGCACCATCTTAATAGCAGGCAGCTGAAAAGCTCCTGGCAATTGGTGCCGGTGTGCGTTTGTTTGAGAGGAGCGTATCTGGAGAACCACTCAGTGTTCAGTGGGTCACTCTGTGCGAAGCACAGACGGTTTCTGGCAGCCCGGCTCTGGTGCAGCCCGCAGTGGGAAGGAGCCCGCAGTGCTCTGTGTGCATCAATGGCTGATCCCCATTTCTCTGCTCTGCAG
Seq C2 exon
TTCGGCGATTCCCAGCAGCTGCGGCTGGTCCGGATCCTGCGGAGCACCGTCATGGTCCGCGTCGGCGGAGGCTGGATGGCCCTGGATGAGTTCTTGGTGAAGAATGACCCCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693:ENSGALT00000005857:103
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(32.9=100)
A:
NA
C2:
PF0218712=GAS2=FE(53.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]