RnoINT0051571 @ rn6
Intron Retention
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:37910962-37914045:-
Coord C1 exon
chr9:37914028-37914045
Coord A exon
chr9:37911080-37914027
Coord C2 exon
chr9:37910962-37911079
Length
2948 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
TTTCTCTCTCTGCTGCCTAGTTT
3' ss Score
6.51
Exon sequences
Seq C1 exon
TTCTTCCTGGGAAATCAG
Seq A exon
GTATAAACCAGTGGAATCTCAAGTATCCAATGATTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTGAGTCTTTAATTCATAGTCATCAAAGCTTGCTCTGGCTAGTCCTCCCTTGCTGTCTTGCTAGCTACTCCAGTGTTGGTTGGTGTGCAGTCTCTGTCAGCGCTGTCACAGCCTCGATCCAGGACTCCTCTCTCGCTTCGTGCCTCAGATGAGGAGATTACTTTTAAGCAAACCAGATAATGAACGGTTGCTGATTAGCTCACCCAGGCGGTGCAAGCACAATGTTCAAGCCCCACTTCTCATGATATTCTGAACAAAGACCATGCCGGTGCCACTGGAACGCAAACTTGATTCTCCAGGCATCACTGTGTCTGACCGATCACGATACATGGCTACAGTAGCACCAGGCAGGGACCATGGGAAGACAAAATACCAAGAGGTCCTCGTAGGGCCCATGAGCAACAAGTGCTTGCCCCATAATTAACTTGTCCTGAGTTAGTGGTTTACAGCGGCACATACTAGGCCGTGTCCTCTGATGCCTTGGCCAAATGTTTGCATAGACATTTTAAGTCAAAAGGGACCGTTTAGCAGGCTATGTCTCGATCAGAGTGTTAAAAATGCATGCAGGAGAAATTGGCCTCCGCTCCATCAGGAGTCAGCCACACACACCTTTTATTAAAAATAGATTTTTTTTTCCTCACATGGTAGATCCTGACTGGTGTCTCCTCCCTCCCCCCTCCCAGGCCCTCCCTTCCTCCTCTCCCATCCAGATCCACTCCCTTTCTGTCTCTCATTAGAAGAGAATGGGCTTCTAAGAGACAGCAACAAAACGTAACAGAGTAAAACACAGTAAGATAAAAAGGGAAACGTTGGACAAGGCAAAGCAACAGAAAGAAAAGAGCCCAAGAGAAGGCACAGGAGTCAGAGAGCTGCCCGTTCTCACACTCGGGAGTCCCGTAAAAACACGAAACTGACACACACATTGAGGACCTGGTGCAGGCCCGAGTAGGCCCAGCCACACTCTGTCTTGTTGCCAATTACCTCTTTACCTTCTCTTTCCCGGAAGCAAGCGTTCAGAGTAAAATGATCCTGTTACCTCCAGCAGAGTTTTCTCAAGAAACTTTTGTAAGTGACACACACTAGTCATTTCCGTTTATGGGGTACCGTGGGATACTTAGGGAGGAAGCAGGGTAAAACATCTATGTGTTATAGCAGCTAAAATGTCACTTCTTCATGATTGGCATTTTCTGAGTCAGCAGTTAGGGTAATGTCGTGCATTTTCACAGAAAATGAGAGAAATGCCCACCAAAAGTACAAAGAACAACATTAGCCTGTTTTTCTTGGGTCATGGTTTGGCCTTTGGAAAATTAGAGGACTTCTGAGGACACCGTTAGTTGCCTGGAGAATACCTTTTAAAAGAACAATAGGAAGGATTGTGTTTAATAGACCCAAAACGTCATTTTACAAAGCGTCTTTTAGTTGTTTCTTCAAGTCTAATTTTGAACCTGGTCTTGAACAAGATTTATCTGATCCAATTATCTGGTTCCTTAAGGGTAATTTTCTTCACGCCCTCTCTGCTTTTTGCTTACTGGCAGCACAGATTTTTGCATCGACAATATAAACACAGGTTTTCGTTTTTAAGTTTACATTTCAGAAGCAGTTCACACACGGGGATATTTAAGTTTCAGAGTTTAAAGAATCAAATTTAGGAAGAGCCGTCGCCACAGATGCGATGTACGCCACTCGAGTCCCTGCTGGACACTTCTGTGGCCTTCTGAGTTTAGGTCCCCGAATGTAGCCTGTGGCTTTTTGCTGAGGTTCTCGCCCTAAAGTGCAGCATTAAGGATTATAGAAAAGTAGCAGCAGGATGTCTCTTCTCACCGTAGCACACGCCAAGAAGCTGCTGGCGTCTCGACAACCATTTTTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTCTTTGTGGCTCGCAAAGTTGGTAAGCGTGAGATTCAGTACCGTGGTTTTCACGGCTGCACCCGAGCCTCTTAGGGATGACTTCCAGGTACGAAAATCGTTTCCCACGGACTTTCAAATCCTCGAAACTTGTGATCAGAGCTGTCAGCATCCTAGCACACGTTTGTTCAAGCCTTGCTGAGTCTGTACACCTCCAAAGAGTTGGCGCCTCTCCAAAGGAGCACCAGTGGTACAGACAGCTCTGAGAAAAAGCTCCTTAGATCCGAAAGCTCTGTCATTAATAATTTGTCGGTACCTGTCTTGAGGTTGCGGTAATATAAAGTGGCAGGTTAATCCAAACTCTAGTTTATTGGCTTACCAGATCGTTAGTGAGGGATTCTTATCAACCATAGCATTCATTACTCTATTCTCCTAAGTCAGAACTTCGCTATGAAACACAAAGGAGCTTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATACACACACACACCTCAGAGGATAGCAGTTTTAACCTGAGAAGCAGTTTTCCCAGTCGGTTTGGGGAAGTCCTTAGGAGCACCTCGTTTTGTGTGAGACCTGGGCAAGGGGACCTGCGCTTATGGTCCAGGTTGTGCTTAACTCCTGGAGACATTCACTGCTGTTGCCTTGCGAGTGCTCTTTCTGTTACAAGAAAGAAAAACAATTTGTAACTTTAGTACAAAGCTTCAACATTACCCTTGATTAACCTTTGTGATCTTTTTTCACCCCCCCCCCCAAACTGTTTCCTTTGGGCTAAATCGGCATGCAGCAGTCTAATGCAGACCATTGCAACCCCCCTCTGAGATCTCACTAATTAATCACCACGAACTAAGCAAGCACTCAAGTTGGTTGCTTACGCTCCCGCAAGCTGCATGCCATCCCTGGGCTTGGCATCGGTACTGACAATCAGAGGTCCTTTCTCTCTCTGCTGCCTAG
Seq C2 exon
TTTGGAGACTCCCAGCAGCTGCGACTGGTTCGGATCCTGCGAAGCACCGTGATGGTCCGTGTTGGAGGTGGATGGATGGCTCTGGATGAGTTCTTAGTGAAAAACGATCCGTGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207:ENSRNOT00000044452:95
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(6.3=100)
A:
NA
C2:
PF0218712=GAS2=FE(49.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]