RnoEX0051767 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141050183-141054816:-
Coord C1 exon
chr5:141054742-141054816
Coord A exon
chr5:141053236-141053253
Coord C2 exon
chr5:141050183-141050300
Length
18 bp
Sequences
Splice sites
3' ss Seq
TCTATTCTTATTGTCTATAGTTC
3' ss Score
5.62
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGACAAGACAAGTGGCTCAGTGCAAGTGTGCGAAAAGATTCCAAGTGGAGCAGATTGGCGAGAATAAATATCGG
Seq A exon
TTCTTCCTCGGCAATCAG
Seq C2 exon
TTTGGAGATTCTCAGCAGTTGCGGCTGGTCCGTATTCTGCGCAGCACTGTGATGGTCCGCGTTGGTGGAGGATGGATGGCCCTGGATGAGTTTCTAGTGAAAAACGATCCCTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(32.9=100)
A:
PF0218712=GAS2=FE(6.3=100)
C2:
PF0218712=GAS2=FE(53.4=100)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGCTCAGTGCAAGTGTG
R:
TCACAGTGCTGCGCAGAATAC
Band lengths:
117-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]