DreEX0044253 @ danRer10
Exon Skipping
Gene
ENSDARG00000028533 | macf1a
Description
microtubule-actin crosslinking factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3606]
Coordinates
chr19:35465245-35468338:-
Coord C1 exon
chr19:35468264-35468338
Coord A exon
chr19:35467591-35467608
Coord C2 exon
chr19:35465245-35465362
Length
18 bp
Sequences
Splice sites
3' ss Seq
ACGCACCGGACTTATTGTAGTTC
3' ss Score
3.38
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCACCAGACAAGTGGCCCAATGCAAGTGTGCGAAGAGGTTTCAAGTGGAGCAGATCGGAGAGAACAAGTATCGG
Seq A exon
TTCTTCCTTGGGAATCAG
Seq C2 exon
TTCGGAGACTCACAGCAGCTTCGTCTCGTACGAATTCTGCGAAGTACAGTCATGGTTAGGGTTGGAGGAGGCTGGATGGCGCTGGATGAGTTCCTGGTGAAGAACGACCCTTGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028533_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.001
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(30.4=100)
A:
PF0218712=GAS2=FE(6.3=100)
C2:
PF0218712=GAS2=PU(87.5=96.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTGGAGCAGATCGGAGA
R:
GCCTCCTCCAACCCTAACCAT
Band lengths:
106-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]