BtaEX0021017 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107192552-107196843:-
Coord C1 exon
chr3:107196769-107196843
Coord A exon
chr3:107195616-107195633
Coord C2 exon
chr3:107192552-107192669
Length
18 bp
Sequences
Splice sites
3' ss Seq
TTACTTTTAACTGTCTATAGTTC
3' ss Score
6.24
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCACAAGACAAGTGGCTCAGTGCAAATGTGCAAAAAGGTTTCAGGTGGAGCAGATTGGAGAGAATAAATACCGG
Seq A exon
TTCTTCCTCGGCAATCAG
Seq C2 exon
TTCGGGGACTCCCAGCAGCTGCGGCTGGTCCGCATCCTGCGCAGCACCGTGATGGTCCGCGTTGGTGGAGGGTGGATGGCCCTGGATGAGTTCCTCGTGAAAAACGACCCCTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(30.4=100)
A:
PF0218712=GAS2=FE(6.3=100)
C2:
PF0218712=GAS2=FE(49.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTGGAGCAGATTGGAGA
R:
CATCCACCCTCCACCAACG
Band lengths:
112-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development