GgaEX0004823 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5713531-5716023:+
Coord C1 exon
chr23:5713531-5713632
Coord A exon
chr23:5714256-5714273
Coord C2 exon
chr23:5715906-5716023
Length
18 bp
Sequences
Splice sites
3' ss Seq
TCCACTTCTCTCCTCCGTAGTTC
3' ss Score
9.45
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTTCTTACCTGGCTCTCTCCGGTGCAGGTCACCAGGCAAGTGGCCCAGTGCAAGTGTGCCAAGAGGTTTCAAGTGGAGCAGATCGGCGAGAACAAATACCGG
Seq A exon
TTCTTCCTCGGCAATCAG
Seq C2 exon
TTCGGCGATTCCCAGCAGCTGCGGCTGGTCCGGATCCTGCGGAGCACCGTCATGGTCCGCGTCGGCGGAGGCTGGATGGCCCTGGATGAGTTCTTGGTGAAGAATGACCCCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(32.9=100)
A:
PF0218712=GAS2=FE(6.3=100)
C2:
PF0218712=GAS2=FE(53.4=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGCGAGAACAAATACCGG
R:
AGAACTCATCCAGGGCCATCC
Band lengths:
115-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]