HsaINT0054746 @ hg19
Intron Retention
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone-lysine N-methyltransferase 1 [Source:HGNC Symbol;Acc:24650]
Coordinates
chr9:140685300-140693366:+
Coord C1 exon
chr9:140685300-140685422
Coord A exon
chr9:140685423-140693264
Coord C2 exon
chr9:140693265-140693366
Length
7842 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
AAGTGGCATTTCTGTTGCAGGAC
3' ss Score
7.46
Exon sequences
Seq C1 exon
GCGGGCGCTAATATTGACACCTGCTCAGAAGACCAGAGGACCCCGTTGATGGAAGCAGCCGAAAACAACCATCTGGAAGCAGTGAAGTACCTCATCAAGGCTGGGGCCCTGGTGGATCCCAAG
Seq A exon
GTATGTTCCCCTGTCAGAATCAACGTCCTAGTGTGTGTGTAGACGTTTCTCAGAAAGCTGAGCAAGGGACATCCTTACTGACATCTCCAGGACTTGGGGCCTTCACACACTGACCCAGTTGTCCAGAAATAGTTCCTTCATCTCACTTTGGTTACCTGGTTTATTATTAAAAACTACTAGTGAGTGCTCACTCTCTACAGAGCCTGACAACAGACAGGTGAGCGAATGACGGGTTTGCTGTGCAGAAGGTGTTCGCCTTACAGTACATCGTCTCACCCTGTCTTCAGCCCAGAGCAATTAGGCAAGAAAAAGAAATCAAAGGCGTTCACATTGGAAAGGAAGAAGTAAAACTGCCTCTGTTCACAGATGACATGTTTTTATATGTAGAAAATCCTAAAGAATATGCAAAAATATTGTAAGCTAACAAAACCAATTCAGCAAAACAGGATAAAAAATTAACACAAAAAAATCAGTTGCATTTCTATATACTTTGAATGAAGTATTCAAAAAAGAAATTAAGAAAACGGTTTCATTTACAGTAGCATCAAAAAGAATAAAATACTTAGGAGTGAGTTTAACCAAGAAGACAAAAGACTTGTATTTGTTAGTTGAAAACTAACAAACATTGCTGAAGGAAATTAAAGAAGACCTGAATAAATAGAAAGACATCCCATGTTCACAGATGAGAAGACTGAATGTGGTTAAAATGGCAGGTGCCACCCAACAGCCTGTAGAGTCCATGGAGTCCTTACTAAAATCCTAACAGCTTTTTTGTTTTTTTGAGACAGTCTTGCTCTGTCACCCAGATTGGAGTGCAGTGGCACAATCTCGGCCTACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCTAGTAGCTGAGATTACAGGCACGCACCACCATGCCTGGCTAATTTTTGGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAAGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCATGGTGCTGGGATTATGAGCATGAGCCACCATGCCCAGCGCTAACAGCTTTTTTTTTTACAGATACAGAAAACTTCTAAAGTTTATACGGAGTCTCAAGAGACCCAGAGAAGCCAAACAATTTTGTGAAAGAACAGAGTTGGAGAACTCACACTTGCTGATTTCAAAACTTACTATATACGGCCACAGTAATGAAAACAGTGTGGGACTGGCATAAAGACAGAAATAGAGACCAATGGAATAAAATAAAAAGCCCAGAAATAAACGATTGCATATATGGTCACTGATTTTTGGCAAAGGTTACAAAGACCATTCAATGGGGAAAAGACTGTCTTTTCAACAGATGGTGCTGAGACAGCTGGATATCCACATCCAGAAGCGTGAGGTTGGACCCTCATCTAACACTGTATTCAAAAATTAATGGAAAATACAGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACGTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAATTCAAGACCAGTCTGTCCAACATGGTGAAACCCGGTCTCTACTAAAAATATAAAAATTAGCCGGGCGTGGTGATGGGTGCCTGTAATCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATCGATTGAACCCGGGAGGCGGAAGTTGCAGTGAGCCGAGATCACGCCACTGCGCTCCAACCTGGGTGACAAGAGCGAAACTCTGTTTCAAAAAAAAGGAAAACGTATGTGGATGAAAGGCCCGTACTTAAGAGCTAAAACCAGAACACTCTTTGAAGAAGACATGGGGGGAAAGCTTTATGACACTGGATTTGACAATGATTTCTTGGATATGATACAAAAGCATGATCAAAGAAATAGACAAACTTGATTAAAATTAAAAACGTTTGGCCCTGGGAAATGATGTGCAGCCGGAAAGACAGCCACCCCCTTGCCTGTCACGCACTCACGTTCGTAGGGAACCTGGCACTAAACCGTCCGTAGATGACCCGCTTCTGGGTTGGGGTTTCATGCGCGGCAAAGCAGCTCCCTCAGTACGATCTGTTGAAAGTCAGCCCCCGATCCAAGGGTTTGTAGAGATAATAAAAGGTTTTAAAATGGGGAAAAATAAGTAAACTTTTGTACATCAAAGATCATGACCAATAGCGTGAAAAGACCACCTACAGAATGAGGAAATGTATTTACAAATTATCTGATAAGAGGTTTTTATGCAGAATATATAAAGAGGTTGTACATCTCAACAACAACAGAAAATTAAACCACCCAATTCAGAAATGGGCAAAGAAGGGGCTTGAGTAGCCATCTCTCTAAGGAAGGCCCACAAGGGCCATTTCCCACATGAAAAGGTGTCCAGCATCACCAGCCACCAGGGAAGCCAAATCAGAGCCACAGGTGAGACGCACCTCAGAGGATGTGGCAATATCGGAACTCTCACGCGTTGCTAGTGGGGATGTAAACGCTGCAGCCATTGTGGAAACCAGTCTGGTGGTTCCTCAGATCGCTAAGCATAGGATTACGCTGTGATCTGTAGCAACTCCACTCCTAAGTGTATGCCACAGGCATGCAAACCAGGAACACAAAGAGATCTTCATACAACAGTGTTTACTGCAGCATTGTTCACAGTAGCTGAAGGACAGAAACAACCCAGATGTCTCAGCAGATGCCTGCGTCAGCACATTCAGTCCATCCATACGATGGGATGTTACTCAGCCATAAAAAGTAATGAAATTTTGACCTATGAACAGCATGGATGGACCTCGAGGACATTCTGCTGAGGGAAAGAAGCCAGGCACAAGGACAAATCCTGTACGATGTGACCGATAGAAGCCATCGAGAGTAGGGAGATTCATAGAGACAGAAAGTAGACTGGAGATTCCCTGGGGCTGGGGGATGGTATTTTGCCTCATGATTGTAGAGCTTTGTTTTGGGTAATGAAAAAGTTTTGGAAATAGTGGTGATTGTGAATGTGTTTAATGCCACAAAACTGTATAAAATGTTTTAAATGGCAAGTTTGGTTATATATTACCATAACAACATTTAAATTCTTAGTCTTTCATATTAATACACATTTTTCCAACAACAAAGTGATCACACTCCTCATAGTAATTCAACTCCTGCCTCATGTCACATTAAACTTTCACTGTTTTCTCATTAAATATTATTCTTTGAAACACCTAAATGGCTGTATCAATTTATGATATAATTTTACCATTTTTAGTCAAATTTGAATATTTAATATTTATCTTATTTTCAATTTTTATTATAAACAATGTTTCAGTAAACATTTTTATAGTTAAATATTTGCACATTAGGCTTCTTTAGGACAGATTTCTGGCTGTAGAATTGCTAGATCAAAGTAGGCAAACATTTGGCCAGGTTCAGTGGCTTGCTTCTGTAATGCTAGTGCTTTGGGAGGCTGAGGCAGAAGGATGGCCTGAGGTGAGGAGTTTGAGATCAGCCTGGACAGCATAGTGAGACCCCATCTCTATAAGAAATGAAAAATTAGCTGGGCGTGGTGGCACGTGCCTGTAGTCATAGCCCCTTGGGAGGCTGAGGCAGGAGCATCACCTGAGCACAGGAGTTTGAGGCTACAGTGAGCTGGATTAGCACCACTGCACTTTAGCCCGGGCGACAGAGTGAGACCCCATCTCTAAGAAAAAAAAAAAAAAAAAGCTAGAGAAAAACAGCACATTACATCTAGACAGACAACGTTATGAAATATTACTGACTTCTCATTTGAAACCAGGGAGGCAGTTTTTATTGTGCTGAAAGAAGCAAAGCCAAAAAAATGTGAACCCAGAATCCTACATCCAGTAAACGTACCCTTCAGCGAATGATGGTGAAATCAAACATGTTCGGGTAAAAAAGCAAAAGGCAGATAAGCTTGCTTGGAATCCTGAAGCTTCCAGGAGGAAAACTTAGCGCGTTGGGAATGAATGAGGGGCACCAGATGGCGGATATGAAGACATTTTTCTATTTAAATTTCCTAAAATGTGAGAGGTCATTTAAACTCAAATAATGTCATAAGGTGGAGTTTAGACACGTTTGGAAGCACAGTAAGTCTTCACTTAACACTGTTGACAGGTCCTTAGAGCATGCGACTTCTTCAAGCATTGAAGCCAGTTTACCACAGACTGATTGATCTAAACAAGAGTGAAGTTCTTCTGCCATATTCCTGGTCACAAAAACATCGGTAAGCTTCCAAATCAAGGCCAAAGTATTTCTGATATTAAACACTGAAATACATGTGAGCTGTACAGACATTTAAGAAAGATTAATACAAACAAGATAAATATTTACCCAGTTATTCCAGGTCAGGGTTGTGAGCGAACAGAGCCTATCCTGGCAACTCAGGTCACCTGGCAGGAAGCAGTCCTGGGCCAGGACACCATCCTATCGCAGGGTGCACACACACACACACACACACACACACTCTCACACTCACATACACACACAGACACACACACATAAACACATTCACTCAGACCAGGACAACGTAGACACACCCATTCACCTAACATGCGAGTCTTTGGGATGTGAGTGAAATTGAGGTACCTGGAGAAAACGCACACAGACACGGGAGGACGTGCAGACTCCACAGACAGTGGCCCCGGCTGGGAGTGGTTTTTGTTTGTTTGTTTGTTTGTTTTTAACCTCATCAATGTTATAACAAAACAACGCTGAATGAAACGATCCTATTGACGACCTGCTGTGAAATACAGGATAATAACTACCCAAAGGAGGGCAGTGTGAAAGTGGAATCACACTGTTGTAAAGGTATTTTATTGTGGGAGGTGGTACAGTATTAATCTAAGAAGACCAGTAAAGACGAATATTGTAATCCCTGGAGAAAGCACCAAGAAAATAAAACAAATAGAGCTTTTCAGGAAAAAAAAACTAGTAGAGGAAGTAAAATGTAATACTGAAAAACTGTGCAACTAGAATGCAGGAATAAAAGCAGATGGGACAAATAGAAAACAAACAGCAGAGCGACAGATGCCAACCTCACCCTGTCAGTAGTTATGCTGCAGACTCGCTCTCATCCTAAAAGGCAGAGGTTTGTCTGATGGCATCGAAAGCGAGAAACCAGCCATGTCTTCCTGCAGCACTCCTGCTTCCAACACGAAGACGCCAGCCAGGCTGGAGAAGCGCGCTTGCACGTGGCAAGCAGGTGAATCCGAGGAGAGGCAAATTACGAAGCCTGGAAGACCACAGAGGCCGCCTTTGTGATTCCAGCACGGGGAAGCGTCTTTTAAGACACAAAAAAGCACAAAAATGATTGACAAAGTTAAGTGCATTAAAATTTAAGAATTTCTCTTCAAAAAGGTGTCACAAAGGACACGAACAGGCAGTCTAAAAACTGGGGGAAGATTTTGCAATGCATCGGCCAAAGATTAATATCCAAAAATATAAAGAACTACAAATGAGGCCAAGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGGCCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTAGGAGAATGACGTGAACCTGGGAGGCGGCATTGGCAGTGAGCTGAGATCGCACCGCTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAAAAAGAAATGAAACCACACAGAAAAATAGGCAAAGAACATAAACGTGCAGTTCCCAGAAAAAGAAATACATGCATATGACCAACAAGCAGATGAAAACACAGGACTGAGGGACCATCTTACAGTCACTGAATTCCATACAACGTAACAGGTGGAAAAGACTGACGGGGCGGGACATAGAGCAGCAGGCAGGGTCCTTACTGGTGGGGCGCGGGGACTGCAGGCTGCCTGGCAAGCAGGGCCTCACACCAGTAGGGTCTGTGATGTGTCTGCAGGTGATATACACTGTGATCTTGAGAATTTAAAAGGGTGTAAAAACATCATTTATGGATATATGTAGTAAAGGTATTGAGATCCGTGGGAATGATGAGTAACGAATTCAGGATAGTGATAACTTCTCGGAAGGAGGCAGGAAAAGAAACCAGACAGGCGCTGTGTGGGGTGTCCCTTGGGTGGGGGTGGGCTCCAGTGTCTTGAGCTTCTGTTTGTGTGCCTGCAGACCTCACAGCTAGCTGCTGTCACTGAACCCGACAGAAGCCTTTCCTTACCTGCAGCCCCGCTCTTTGCCACCTTCACGTCTATTCCCACGGGGTTCCTTTGGCTGACTCTCAATCCCCTCACCCCACCACTCTGCCGCTCCCAGCCCTGCCCTCCTCCTGCCTGGTGTCTTGCTCTTGTGACAGCTGGCTTCCTTCACTAAGCTTCCTTTGCTGGCGTCTGTCTCTCACCTGCTTGATTCAGAAGTGCTTGCCCAAGGTCTCTGCCAGGTGCACCTGCTTCTGTCCTGAATTCTGTGACAGTCTGCCAGCAGTTAGGAGATTGTCAGCTGCACTATTCCAGCGATTAAAGACACTTGAAAATTAAGGCAGACCTTTAACAACCATGCATCATTTTGTATTCATAATAAAATTACAATTCTGAACACTAGCCGTGTGGGAACCGGGTGTGCTGGCTTTCCTTGAGGAAGGTGAGCATGCTGATTTAGCCCCAGGTAGGGGAGCAGTATGTGCAGTGATGCCTGCGAAACTCTATGACTGCTACACGGACTCCACCGAGATAAGGGGAGAAAGGTAATGAAGGAACATGGTTAAGTGGAGACAGGAACAGGGGAGCAAAGCAAAGCAAACACCTGAAGGGAGACGGTGGTGGAGTGCGTCTGCGGGCCTGTGTGAGGAGCACAGGCAGGAAGAACCCTGTGTAAGGCGTGTGGATGGCACAGCGGTGTGGGCGGCACCGGCTCCCCTGCCTCTTCTGGAGCTTCCTGGGTCTGACCTCCAACCTTGCATGTCTTTGTTTTCCTTTGAGATGGTTTGATAGGTGTGATCTATTTGGTCTCCTCAGGGAAACAGAGCTGAAAGGAAATGAGAGGGTGTTCCCAATCTGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTGTAATCCCAGTTACGATGCCTACGACTCCCAGACCAAAGTGGGAGGATTGCTTGGGGTCAGGAGTTCAAAAACAGCCTAGGCAGTGTAGCAAGACCCTGTCTCTAGGAAAGAAAAAAGTACATTAGCCAGTCATGGTGGTGCACACCTGTAGTCCCAGCTACGTGGGAGGCTGAGGCAGGAGGATCACTTGAGCATGGGAATCAGAGGCTGTGGTGAGCTGTGATCGCACCACTGCACTCCAGCCTGGGCGATACAGCAAGACCCCATCTCAAAAAGGAGAGAAAGAAAAAAAAAACAAGATGTGCCCAGCAGCAAAGGAAGCAAGAGGAGGGCAGAGTCCCTGGCGTTTCCGGAGCCGTGGGGTGGGCCTGGCGCTCTTTGTGTTCCCACTTTTTGCCATCTATTATTTTAAGTTCTGTGGTACACGGACAACTATTGCTGAATCATTGACGGTGTCTTCACTGTGCCAGGCGACTGACCACTCATGGGGCCACAGGGGGCTGCACACAGCGCTTGGACCTCGGCTGTTCCCTCGGCCTCAGCCTGGGTTTCCTTGTCATTTGAGCAGGACAGTACCCCACCCGCATGGTAGACACCGGGTTCTCCTGGATCCCGCACTCAGGGCTGGCACACCAGGATCACAGGTATGGATTCTTTGACTAAGTGGCATTTCTGTTGCAG
Seq C2 exon
GACGCAGAGGGCTCTACGTGTTTGCACCTGGCTGCCAAGAAAGGCCACTACGAAGTGGTCCAGTACCTGCTTTCAAATGGACAGATGGACGTCAACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090-EHMT1:NM_024757:16
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(25.0=19.5),PF127962=Ank_2=PU(26.6=61.0)
A:
NA
C2:
PF127962=Ank_2=FE(35.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)