GgaINT0126651 @ galGal3
Intron Retention
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2469644-2472054:+
Coord C1 exon
chr17:2469644-2469766
Coord A exon
chr17:2469767-2471952
Coord C2 exon
chr17:2471953-2472054
Length
2186 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
3' ss Seq
TGTTCTGTGCTTGTGTCCAGGAT
3' ss Score
8.97
Exon sequences
Seq C1 exon
GCTGGTGCGAATATAGACAGCTGCTCTGAAGACCAGCGGACCCCACTGATGGAAGCAGCTGAAAACAACCACCTGGAAACTGTGAAATACCTTATCAAGGCTGGAGCACTAGTAGATCCTAAG
Seq A exon
GTAGCACTTTATTCCTCTGTTGGCCATTTCTTTTTTAAAGGTCTTAAGCCCAGGAAGAAGGGAAATTAAGGTTTGTTTGTCTTTGGTGCGAAGACTTGGACAGGCTGTGCTGGCTCTGAGCAGTCTGGGGAAGTGCAGTTGCTTACTACATCAATTCATGGCACCAAATATAGGGGGTGTTTGATTTGATATGGGGCCACTAAGAAGCACTGGTGTCATTGCATTGCGTTTGGAGTTTGATTTCAGAGTTTCCTTCTCTACAGACTTAGTAATGAGATTTTTGGGGTGCCATTTGAAAATGGGTTGGTAATTAGGTGCTTGCAAAGCCAGCAGAAGTGACAGGAAGCTTTGATCTCCAAAGGTGTAATGTGCTGTTTTTTGCAATCACGCCGCAGTGGCAAAATTGGACCCAGTCTTTAAACTCCCTACCCCTTAATTTAAACAAATACAATAAAATTCAGCTGTCTGTTTGCCTTTAGCATGCTCGGGTTGCTTTGCAGTCTTGGAAAATATACAGATCGTTTATTAGCCCCATAAATCAGACTCTATTTGGAGTACAAGAACCCTCCCCATGTGAACTTCTTATTGTTACAACCTGCTGCTGTTGGCTCACTCTGCTATTGCTAGGAAGCACGGCAGGGCCAGGATGCTCATTTTGTGACGGAGCTGCCTAAGCTGGGAGGATTGCACAAGATAAGGACTGCTGTCCACCCCAAGCCTTGGATGGCTCCTTGGGAGGCTGGCTCTGAGCTGGGAAGGGGGAAAGGGCAGGGCAGGCACATGCAAGGACAGCAGCCACTATGAAACTGCATCTTGCAGCAATCCAGATGTCACTCACCTCATTTATTATGTCGGAGAGAAGAGGTTTCCTGCTTCTGAAGGCAAAGGGAAGGAATAATCTCCAAGCCAGCAAAAACAAATTAGAAGCCCGAGATGACCTCTGAAGTCTAGACTAGTTTATTATGTTAATTAGTTTCTTGCACCAAATTAGTCATCTTCTGAAAGTAGCAACATTGCAGTTTGAAATCAGCTCCAGCCATTTTGATGAAAAATCAAGCAGTTATCTGCTGGGGGTGTGCACTGAGTGTGCCCAGCCTGTGGGGGGGGAGGGTGGGGATGAAGCCCCCAGGCTGAAGCCACCTGATCCTGTCCATAGGATTTGCAAGCCACTCGAAACTGCCAAAAAGGCTGTATTAAAATATGCCAGCTCACTGTAGAATGGAGAAGCTGCACTTGGCTTATATTAATCTGAGAGGGAGGAGTGACGTTATTCAGTTGTCAGGCTCTCAAGGGAGAGTGGAAAACTCTTCTTTGCCCCTAGGAAACCCCCTCAGTATGATCCCTGATGTGTGGCTTCCCAAAATTGCTCCCTATCCCTGTGCTGTGTTCTCTTTTCAAGGGAGTGTCCTCAATCAGAAAACTCTGTAGCAGGAAGGAAACTTTTCAGGCTTTTCAGGCTTTCATTTCCTCCTCCTTTCCTGGTCTCCAAGCCTTGCTGTAAGCTGAACTCTTGGGATAGAAGCGTCTGATAAAAGTCAGACTCCAGCCGAGAGTTTTGGTGTTGGTGTGGGAGTGTCTCCATCATGACTCACAGCCCCAGCCTGCCCATCGACCAGACTCTGCAGGCTCTGCTCCCAGAAGCATTTTTTCTTTCAGCCATTGCTGTTGTTATTTTTCTCCAGTCTGGGTACATGACCGAGGGCACCCTGGGGTCTTGAACCCTGCTGCCAGCTGCTGGGTTAAGCCTTGTGCTAATAAACACAACAAAAAGCTGTATAAACAGTATTCCAGGTTGAGGCAAGGCTACTTTTCGGATGTGAAGTGCAGTGCTGTGTCTCTGTGAGAGATTCATGCCTCCTCTGGGCTCTTCGACACAGAGACTGTCTGCTGGGGAAGGGGAGCACCCACTGGGTGGGGTTGATACCTTCCCTGTGCTTATAAAGGCGTCTCTTCCCATAGCCTTTGCTCTCACCCTTCTGCTCTGCACTGGCTGCATGTCTGAGCTTTCTGGAAAGCTGCCTCTGCTCTGTGCCAGTACTGATTGTTGCTGCTTTTGGAGTTCTCTGCTTTGTCTGATGTTCTTCTGATGACTTCTCTGATGTTTCTGAGCATCGCTGGTGGTCTGCAGATGTGGGGAATGTGGGGAGGGGACGTTCCTTGAGGACTTGTTCTGTGCTTGTGTCCAG
Seq C2 exon
GATGCAGAGGGCTCCACGTGTCTGCACTTGGCTGCCAAGAAGGGGCACTACGATGTTGTTCAGTACCTCCTGTCCATAGGGAAGATGGATGTCAACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(27.3=22.0),PF127962=Ank_2=PU(26.6=61.0)
A:
NA
C2:
PF127962=Ank_2=FE(35.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]