DreINT0061782 @ danRer10
Intron Retention
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14562643-14562960:-
Coord C1 exon
chr21:14562838-14562960
Coord A exon
chr21:14562745-14562837
Coord C2 exon
chr21:14562643-14562744
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TTTTATTTTTTTATTTTCAGGAT
3' ss Score
11.73
Exon sequences
Seq C1 exon
GCTGGTGCCAACCTTGACATGTGTGATGAGGACCAGCGGACGCCTCTGATGGAGGCCTGTGAGAACAACCATCTCGAAACTGTGCGATATCTTCTGCGGGCCGGAGCCATCGTCTCTCACAAG
Seq A exon
GTCAGTAGCCTCAAGCACGGAGGTTGATAAGCCTATTTAATAATCAGTTTAAATATTGACCACATCCTGTTTTTTTTATTTTTTTATTTTCAG
Seq C2 exon
GATGTTGAAGGATCAACTTGTCTCCATCTTGCTGCTAAGAACGGGCATTTCAGCATTGTACAACATCTGCTCTCTGCAGGCCTTGTTGATATTAACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634:ENSDART00000124223:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(9.5=19.5),PF127962=Ank_2=PU(26.6=61.0)
A:
NA
C2:
PF127962=Ank_2=FE(35.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCAACCTTGACATGTGT
R:
AATGCCCGTTCTTAGCAGCAA
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]