RnoINT0053574 @ rn6
Intron Retention
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4586042-4586371:+
Coord C1 exon
chr20:4586042-4586164
Coord A exon
chr20:4586165-4586269
Coord C2 exon
chr20:4586270-4586371
Length
105 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
CTGGCTCCTGTCTCCCTCAGGAA
3' ss Score
10.87
Exon sequences
Seq C1 exon
GCAGGAGCCAACATCAACGCCGTGGATAAGCAGCAGCGCACCCCGCTGATGGAGGCCGTGGTGAACAACCACCTGGAGGTGGCTCGCTACATGGTGCAGCTGGGCGGCTGTGTGTACAGCAAG
Seq A exon
GTGTGGGGCGGAGCCGTGCGGGGCGGGGCCCGGCGGTGGGAGGGAGGACGGATGCCTGGGCACCAAGTGCCAGCCGAAGGGCTCACTGGCTCCTGTCTCCCTCAG
Seq C2 exon
GAAGAGGATGGCTCTACCTGTCTCCATCATGCGGCCAAAATTGGGAACTTGGAAATGGTCAGCCTGCTGCTGAGCACAGGGCAGGTGGACGTCAATGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630:ENSRNOT00000047370:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(42.1=100),PF127962=Ank_2=PU(6.8=12.2)
A:
NA
C2:
PF127962=Ank_2=PD(0.1=0.0),PF127962=Ank_2=FE(44.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACATCAACGCCGTGGATA
R:
CTGGGCATTGACGTCCACC
Band lengths:
218-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]