MmuINT0055999 @ mm10
Intron Retention
Gene
ENSMUSG00000013787 | Ehmt2
Description
euchromatic histone lysine N-methyltransferase 2 [Source:MGI Symbol;Acc:MGI:2148922]
Coordinates
chr17:34907522-34907844:+
Coord C1 exon
chr17:34907522-34907644
Coord A exon
chr17:34907645-34907742
Coord C2 exon
chr17:34907743-34907844
Length
98 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
CTGGCTCGTGTTTCCCTCAGGAA
3' ss Score
10
Exon sequences
Seq C1 exon
GCAGGAGCCAACATCAATGCCGTAGATAAGCAACAACGCACGCCACTAATGGAGGCCGTGGTGAACAACCACCTGGAGGTGGCACGCTACATGGTGCAGTTAGGTGGCTGTGTCTACAGCAAG
Seq A exon
GTGCGGGATGGCGCTGGAGAGCTGGGTGGTGGGAGGAAGAAGGGATACCTGGGCACGGGGTGCTAGCTGAAGGGTTCACTGGCTCGTGTTTCCCTCAG
Seq C2 exon
GAAGAGGATGGCTCCACCTGTCTACATCATGCAGCCAAAATTGGGAACTTGGAAATGGTCAGCCTGCTACTGAGCACAGGACAGGTGGACGTCAATGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013787:ENSMUST00000013931:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(42.1=100),PF127962=Ank_2=PU(6.8=12.2)
A:
NA
C2:
PF127962=Ank_2=PD(0.1=0.0),PF127962=Ank_2=FE(44.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAATGGAGGCCGTGGTGAAC
R:
CATTGACGTCCACCTGTCCTG
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types