BtaINT0024979 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005676 | BAT8
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 2 (EHMT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206263]
Coordinates
chr23:27285315-27285624:+
Coord C1 exon
chr23:27285315-27285437
Coord A exon
chr23:27285438-27285522
Coord C2 exon
chr23:27285523-27285624
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
TTTGCCCGCGTCACCCCCAGGAG
3' ss Score
9.29
Exon sequences
Seq C1 exon
GCTGGAGCCAACATCAATGCCGTGGACAAGCAGCAGCGGACGCCGCTGATGGAGGCCGTGGTGAACAACCATCTGGAGGTGGCTCGCTACATGGTGCAGCGTGGGGGCTGTGTCTACAGCAAG
Seq A exon
GTGCGTGGCCGGACAGGCCTGGCTGGGCTCAGGGGCTGGGCCTGAGGTGCCAGCCTGAGGGCTCATTTGCCCGCGTCACCCCCAG
Seq C2 exon
GAGGAAGACGGCTCCACCTGCCTCCACCACGCCGCCAAAATTGGGAACCTGGAGATGGTCAGCCTGCTGCTGAGCACGGGACAGGTGGACGTCAATGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005676:ENSBTAT00000007456:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(42.1=100),PF127962=Ank_2=PU(6.8=12.2)
A:
NA
C2:
PF127962=Ank_2=PD(0.1=0.0),PF127962=Ank_2=FE(44.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACATCAATGCCGTGGACA
R:
CTGACCATCTCCAGGTTCCCA
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]