HsaINT1012306 @ hg38
Intron Retention
Gene
ENSG00000204371 | EHMT2
Description
euchromatic histone lysine methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr6:31886581-31886897:-
Coord C1 exon
chr6:31886775-31886897
Coord A exon
chr6:31886683-31886774
Coord C2 exon
chr6:31886581-31886682
Length
92 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
TTTGCCCGTGTCTCCCTCAGGAG
3' ss Score
10.61
Exon sequences
Seq C1 exon
GCTGGAGCCAACATAAATGCAGTGGACAAACAGCAGCGGACGCCACTGATGGAGGCCGTGGTGAACAACCACCTGGAGGTAGCCCGTTACATGGTGCAGCGTGGTGGCTGTGTCTATAGCAAG
Seq A exon
GTGTGCGCGCAGGCAGCAGGGCGTGGCCCCCGGAGTCAGGGACCAGGTTTGGGGTGCCAGCCCAAAGGCTCATTTGCCCGTGTCTCCCTCAG
Seq C2 exon
GAGGAGGACGGTTCCACCTGCCTCCACCACGCAGCCAAAATCGGGAACTTGGAGATGGTCAGCCTGCTGCTGAGCACAGGACAGGTGGACGTCAACGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204371:ENST00000375537:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(42.1=100),PF127962=Ank_2=PU(6.8=12.2)
A:
NA
C2:
PF127962=Ank_2=PD(0.1=0.0),PF127962=Ank_2=FE(44.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGTGGACAAACAGCAGC
R:
TGACCATCTCCAAGTTCCCGA
Band lengths:
168-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains