DreINT0061760 @ danRer10
Intron Retention
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28902709-28903052:-
Coord C1 exon
chr5:28902930-28903052
Coord A exon
chr5:28902811-28902929
Coord C2 exon
chr5:28902709-28902810
Length
119 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
AATTACTGATGTCTTCACAGGAT
3' ss Score
7.52
Exon sequences
Seq C1 exon
GCTGGTGCGAACCTAGACATGTGTGACATTGAGCAGCGAACGCCTTTGATGTACGCCTGTAACAACAATCATCTAGAAAATGTAAAATACTTGCTCAAAGCTGGTGCTTCTTCTGCACATAAG
Seq A exon
GTACAGTAGCAGACAGATGTTACAAAATACTAAACATTGAGCTGAGGTATCAAAATCCCTCTGTGCTGTATGTCTTAATGTATGACTAAATATAATAATAATTACTGATGTCTTCACAG
Seq C2 exon
GATATGAGAGGCTCTACATGTCTTCATTTGGCAGCCAGAGCAGGACATACCAATGTGCTGCAGTATCTGCTCTCCCTGCCATCCATAGATGTCAACTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157:ENSDART00000126018:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(42.1=100),PF127962=Ank_2=PU(4.2=7.3)
A:
NA
C2:
PF127962=Ank_2=PD(0.1=0.0),PF127962=Ank_2=FE(45.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGCGAACCTAGACATG
R:
TCTATGGATGGCAGGGAGAGC
Band lengths:
212-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]