HsaINT1012287 @ hg38
Intron Retention
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone lysine methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24650]
Coordinates
chr9:137790848-137798914:+
Coord C1 exon
chr9:137790848-137790970
Coord A exon
chr9:137790971-137798812
Coord C2 exon
chr9:137798813-137798914
Length
7842 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
AAGTGGCATTTCTGTTGCAGGAC
3' ss Score
7.46
Exon sequences
Seq C1 exon
GCGGGCGCTAATATTGACACCTGCTCAGAAGACCAGAGGACCCCGTTGATGGAAGCAGCCGAAAACAACCATCTGGAAGCAGTGAAGTACCTCATCAAGGCTGGGGCCCTGGTGGATCCCAAG
Seq A exon
GTATGTTCCCCTGTCAGAATCAACGTCCTAGTGTGTGTGTAGACGTTTCTCAGAAAGCTGAGCAAGGGACATCCTTACTGACATCTCCAGGACTTGGGGCCTTCACACACTGACCCAGTTGTCCAGAAATAGTTCCTTCATCTCACTTTGGTTACCTGGTTTATTATTAAAAACTACTAGTGAGTGCTCACTCTCTACAGAGCCTGACAACAGACAGGTGAGCGAATGACGGGTTTGCTGTGCAGAAGGTGTTCGCCTTACAGTACATCGTCTCACCCTGTCTTCAGCCCAGAGCAATTAGGCAAGAAAAAGAAATCAAAGGCGTTCACATTGGAAAGGAAGAAGTAAAACTGCCTCTGTTCACAGATGACATGTTTTTATATGTAGAAAATCCTAAAGAATATGCAAAAATATTGTAAGCTAACAAAACCAATTCAGCAAAACAGGATAAAAAATTAACACAAAAAAATCAGTTGCATTTCTATATACTTTGAATGAAGTATTCAAAAAAGAAATTAAGAAAACGGTTTCATTTACAGTAGCATCAAAAAGAATAAAATACTTAGGAGTGAGTTTAACCAAGAAGACAAAAGACTTGTATTTGTTAGTTGAAAACTAACAAACATTGCTGAAGGAAATTAAAGAAGACCTGAATAAATAGAAAGACATCCCATGTTCACAGATGAGAAGACTGAATGTGGTTAAAATGGCAGGTGCCACCCAACAGCCTGTAGAGTCCATGGAGTCCTTACTAAAATCCTAACAGCTTTTTTGTTTTTTTGAGACAGTCTTGCTCTGTCACCCAGATTGGAGTGCAGTGGCACAATCTCGGCCTACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCTAGTAGCTGAGATTACAGGCACGCACCACCATGCCTGGCTAATTTTTGGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAAGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCATGGTGCTGGGATTATGAGCATGAGCCACCATGCCCAGCGCTAACAGCTTTTTTTTTTACAGATACAGAAAACTTCTAAAGTTTATACGGAGTCTCAAGAGACCCAGAGAAGCCAAACAATTTTGTGAAAGAACAGAGTTGGAGAACTCACACTTGCTGATTTCAAAACTTACTATATACGGCCACAGTAATGAAAACAGTGTGGGACTGGCATAAAGACAGAAATAGAGACCAATGGAATAAAATAAAAAGCCCAGAAATAAACGATTGCATATATGGTCACTGATTTTTGGCAAAGGTTACAAAGACCATTCAATGGGGAAAAGACTGTCTTTTCAACAGATGGTGCTGAGACAGCTGGATATCCACATCCAGAAGCGTGAGGTTGGACCCTCATCTAACACTGTATTCAAAAATTAATGGAAAATACAGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACGTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAATTCAAGACCAGTCTGTCCAACATGGTGAAACCCGGTCTCTACTAAAAATATAAAAATTAGCCGGGCGTGGTGATGGGTGCCTGTAATCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATCGATTGAACCCGGGAGGCGGAAGTTGCAGTGAGCCGAGATCACGCCACTGCGCTCCAACCTGGGTGACAAGAGCGAAACTCTGTTTCAAAAAAAAGGAAAACGTATGTGGATGAAAGGCCCGTACTTAAGAGCTAAAACCAGAACACTCTTTGAAGAAGACATGGGGGGAAAGCTTTATGACACTGGATTTGACAATGATTTCTTGGATATGATACAAAAGCATGATCAAAGAAATAGACAAACTTGATTAAAATTAAAAACGTTTGGCCCTGGGAAATGATGTGCAGCCGGAAAGACAGCCACCCCCTTGCCTGTCACGCACTCACGTTCGTAGGGAACCTGGCACTAAACCGTCCGTAGATGACCCGCTTCTGGGTTGGGGTTTCATGCGCGGCAAAGCAGCTCCCTCAGTACGATCTGTTGAAAGTCAGCCCCCGATCCAAGGGTTTGTAGAGATAATAAAAGGTTTTAAAATGGGGAAAAATAAGTAAACTTTTGTACATCAAAGATCATGACCAATAGCGTGAAAAGACCACCTACAGAATGAGGAAATGTATTTACAAATTATCTGATAAGAGGTTTTTATGCAGAATATATAAAGAGGTTGTACATCTCAACAACAACAGAAAATTAAACCACCCAATTCAGAAATGGGCAAAGAAGGGGCTTGAGTAGCCATCTCTCTAAGGAAGGCCCACAAGGGCCATTTCCCACATGAAAAGGTGTCCAGCATCACCAGCCACCAGGGAAGCCAAATCAGAGCCACAGGTGAGACGCACCTCAGAGGATGTGGCAATATCGGAACTCTCACGCGTTGCTAGTGGGGATGTAAACGCTGCAGCCATTGTGGAAACCAGTCTGGTGGTTCCTCAGATCGCTAAGCATAGGATTACGCTGTGATCTGTAGCAACTCCACTCCTAAGTGTATGCCACAGGCATGCAAACCAGGAACACAAAGAGATCTTCATACAACAGTGTTTACTGCAGCATTGTTCACAGTAGCTGAAGGACAGAAACAACCCAGATGTCTCAGCAGATGCCTGCGTCAGCACATTCAGTCCATCCATACGATGGGATGTTACTCAGCCATAAAAAGTAATGAAATTTTGACCTATGAACAGCATGGATGGACCTCGAGGACATTCTGCTGAGGGAAAGAAGCCAGGCACAAGGACAAATCCTGTACGATGTGACCGATAGAAGCCATCGAGAGTAGGGAGATTCATAGAGACAGAAAGTAGACTGGAGATTCCCTGGGGCTGGGGGATGGTATTTTGCCTCATGATTGTAGAGCTTTGTTTTGGGTAATGAAAAAGTTTTGGAAATAGTGGTGATTGTGAATGTGTTTAATGCCACAAAACTGTATAAAATGTTTTAAATGGCAAGTTTGGTTATATATTACCATAACAACATTTAAATTCTTAGTCTTTCATATTAATACACATTTTTCCAACAACAAAGTGATCACACTCCTCATAGTAATTCAACTCCTGCCTCATGTCACATTAAACTTTCACTGTTTTCTCATTAAATATTATTCTTTGAAACACCTAAATGGCTGTATCAATTTATGATATAATTTTACCATTTTTAGTCAAATTTGAATATTTAATATTTATCTTATTTTCAATTTTTATTATAAACAATGTTTCAGTAAACATTTTTATAGTTAAATATTTGCACATTAGGCTTCTTTAGGACAGATTTCTGGCTGTAGAATTGCTAGATCAAAGTAGGCAAACATTTGGCCAGGTTCAGTGGCTTGCTTCTGTAATGCTAGTGCTTTGGGAGGCTGAGGCAGAAGGATGGCCTGAGGTGAGGAGTTTGAGATCAGCCTGGACAGCATAGTGAGACCCCATCTCTATAAGAAATGAAAAATTAGCTGGGCGTGGTGGCACGTGCCTGTAGTCATAGCCCCTTGGGAGGCTGAGGCAGGAGCATCACCTGAGCACAGGAGTTTGAGGCTACAGTGAGCTGGATTAGCACCACTGCACTTTAGCCCGGGCGACAGAGTGAGACCCCATCTCTAAGAAAAAAAAAAAAAAAAAGCTAGAGAAAAACAGCACATTACATCTAGACAGACAACGTTATGAAATATTACTGACTTCTCATTTGAAACCAGGGAGGCAGTTTTTATTGTGCTGAAAGAAGCAAAGCCAAAAAAATGTGAACCCAGAATCCTACATCCAGTAAACGTACCCTTCAGCGAATGATGGTGAAATCAAACATGTTCGGGTAAAAAAGCAAAAGGCAGATAAGCTTGCTTGGAATCCTGAAGCTTCCAGGAGGAAAACTTAGCGCGTTGGGAATGAATGAGGGGCACCAGATGGCGGATATGAAGACATTTTTCTATTTAAATTTCCTAAAATGTGAGAGGTCATTTAAACTCAAATAATGTCATAAGGTGGAGTTTAGACACGTTTGGAAGCACAGTAAGTCTTCACTTAACACTGTTGACAGGTCCTTAGAGCATGCGACTTCTTCAAGCATTGAAGCCAGTTTACCACAGACTGATTGATCTAAACAAGAGTGAAGTTCTTCTGCCATATTCCTGGTCACAAAAACATCGGTAAGCTTCCAAATCAAGGCCAAAGTATTTCTGATATTAAACACTGAAATACATGTGAGCTGTACAGACATTTAAGAAAGATTAATACAAACAAGATAAATATTTACCCAGTTATTCCAGGTCAGGGTTGTGAGCGAACAGAGCCTATCCTGGCAACTCAGGTCACCTGGCAGGAAGCAGTCCTGGGCCAGGACACCATCCTATCGCAGGGTGCACACACACACACACACACACACACACTCTCACACTCACATACACACACAGACACACACACATAAACACATTCACTCAGACCAGGACAACGTAGACACACCCATTCACCTAACATGCGAGTCTTTGGGATGTGAGTGAAATTGAGGTACCTGGAGAAAACGCACACAGACACGGGAGGACGTGCAGACTCCACAGACAGTGGCCCCGGCTGGGAGTGGTTTTTGTTTGTTTGTTTGTTTGTTTTTAACCTCATCAATGTTATAACAAAACAACGCTGAATGAAACGATCCTATTGACGACCTGCTGTGAAATACAGGATAATAACTACCCAAAGGAGGGCAGTGTGAAAGTGGAATCACACTGTTGTAAAGGTATTTTATTGTGGGAGGTGGTACAGTATTAATCTAAGAAGACCAGTAAAGACGAATATTGTAATCCCTGGAGAAAGCACCAAGAAAATAAAACAAATAGAGCTTTTCAGGAAAAAAAAACTAGTAGAGGAAGTAAAATGTAATACTGAAAAACTGTGCAACTAGAATGCAGGAATAAAAGCAGATGGGACAAATAGAAAACAAACAGCAGAGCGACAGATGCCAACCTCACCCTGTCAGTAGTTATGCTGCAGACTCGCTCTCATCCTAAAAGGCAGAGGTTTGTCTGATGGCATCGAAAGCGAGAAACCAGCCATGTCTTCCTGCAGCACTCCTGCTTCCAACACGAAGACGCCAGCCAGGCTGGAGAAGCGCGCTTGCACGTGGCAAGCAGGTGAATCCGAGGAGAGGCAAATTACGAAGCCTGGAAGACCACAGAGGCCGCCTTTGTGATTCCAGCACGGGGAAGCGTCTTTTAAGACACAAAAAAGCACAAAAATGATTGACAAAGTTAAGTGCATTAAAATTTAAGAATTTCTCTTCAAAAAGGTGTCACAAAGGACACGAACAGGCAGTCTAAAAACTGGGGGAAGATTTTGCAATGCATCGGCCAAAGATTAATATCCAAAAATATAAAGAACTACAAATGAGGCCAAGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGGCCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTAGGAGAATGACGTGAACCTGGGAGGCGGCATTGGCAGTGAGCTGAGATCGCACCGCTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCATCTCAAAAAAAAAAAAAAAAAGAAATGAAACCACACAGAAAAATAGGCAAAGAACATAAACGTGCAGTTCCCAGAAAAAGAAATACATGCATATGACCAACAAGCAGATGAAAACACAGGACTGAGGGACCATCTTACAGTCACTGAATTCCATACAACGTAACAGGTGGAAAAGACTGACGGGGCGGGACATAGAGCAGCAGGCAGGGTCCTTACTGGTGGGGCGCGGGGACTGCAGGCTGCCTGGCAAGCAGGGCCTCACACCAGTAGGGTCTGTGATGTGTCTGCAGGTGATATACACTGTGATCTTGAGAATTTAAAAGGGTGTAAAAACATCATTTATGGATATATGTAGTAAAGGTATTGAGATCCGTGGGAATGATGAGTAACGAATTCAGGATAGTGATAACTTCTCGGAAGGAGGCAGGAAAAGAAACCAGACAGGCGCTGTGTGGGGTGTCCCTTGGGTGGGGGTGGGCTCCAGTGTCTTGAGCTTCTGTTTGTGTGCCTGCAGACCTCACAGCTAGCTGCTGTCACTGAACCCGACAGAAGCCTTTCCTTACCTGCAGCCCCGCTCTTTGCCACCTTCACGTCTATTCCCACGGGGTTCCTTTGGCTGACTCTCAATCCCCTCACCCCACCACTCTGCCGCTCCCAGCCCTGCCCTCCTCCTGCCTGGTGTCTTGCTCTTGTGACAGCTGGCTTCCTTCACTAAGCTTCCTTTGCTGGCGTCTGTCTCTCACCTGCTTGATTCAGAAGTGCTTGCCCAAGGTCTCTGCCAGGTGCACCTGCTTCTGTCCTGAATTCTGTGACAGTCTGCCAGCAGTTAGGAGATTGTCAGCTGCACTATTCCAGCGATTAAAGACACTTGAAAATTAAGGCAGACCTTTAACAACCATGCATCATTTTGTATTCATAATAAAATTACAATTCTGAACACTAGCCGTGTGGGAACCGGGTGTGCTGGCTTTCCTTGAGGAAGGTGAGCATGCTGATTTAGCCCCAGGTAGGGGAGCAGTATGTGCAGTGATGCCTGCGAAACTCTATGACTGCTACACGGACTCCACCGAGATAAGGGGAGAAAGGTAATGAAGGAACATGGTTAAGTGGAGACAGGAACAGGGGAGCAAAGCAAAGCAAACACCTGAAGGGAGACGGTGGTGGAGTGCGTCTGCGGGCCTGTGTGAGGAGCACAGGCAGGAAGAACCCTGTGTAAGGCGTGTGGATGGCACAGCGGTGTGGGCGGCACCGGCTCCCCTGCCTCTTCTGGAGCTTCCTGGGTCTGACCTCCAACCTTGCATGTCTTTGTTTTCCTTTGAGATGGTTTGATAGGTGTGATCTATTTGGTCTCCTCAGGGAAACAGAGCTGAAAGGAAATGAGAGGGTGTTCCCAATCTGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTGTAATCCCAGTTACGATGCCTACGACTCCCAGACCAAAGTGGGAGGATTGCTTGGGGTCAGGAGTTCAAAAACAGCCTAGGCAGTGTAGCAAGACCCTGTCTCTAGGAAAGAAAAAAGTACATTAGCCAGTCATGGTGGTGCACACCTGTAGTCCCAGCTACGTGGGAGGCTGAGGCAGGAGGATCACTTGAGCATGGGAATCAGAGGCTGTGGTGAGCTGTGATCGCACCACTGCACTCCAGCCTGGGCGATACAGCAAGACCCCATCTCAAAAAGGAGAGAAAGAAAAAAAAAACAAGATGTGCCCAGCAGCAAAGGAAGCAAGAGGAGGGCAGAGTCCCTGGCGTTTCCGGAGCCGTGGGGTGGGCCTGGCGCTCTTTGTGTTCCCACTTTTTGCCATCTATTATTTTAAGTTCTGTGGTACACGGACAACTATTGCTGAATCATTGACGGTGTCTTCACTGTGCCAGGCGACTGACCACTCATGGGGCCACAGGGGGCTGCACACAGCGCTTGGACCTCGGCTGTTCCCTCGGCCTCAGCCTGGGTTTCCTTGTCATTTGAGCAGGACAGTACCCCACCCGCATGGTAGACACCGGGTTCTCCTGGATCCCGCACTCAGGGCTGGCACACCAGGATCACAGGTATGGATTCTTTGACTAAGTGGCATTTCTGTTGCAG
Seq C2 exon
GACGCAGAGGGCTCTACGTGTTTGCACCTGGCTGCCAAGAAAGGCCACTACGAAGTGGTCCAGTACCTGCTTTCAAATGGACAGATGGACGTCAACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090:ENST00000460843:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(25.0=19.5),PF127962=Ank_2=PU(26.6=61.0)
A:
NA
C2:
PF127962=Ank_2=FE(35.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains