HsaINT0065097 @ hg19
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:1212]
Coordinates
chr17:43315931-43316432:+
Coord C1 exon
chr17:43315931-43316005
Coord A exon
chr17:43316006-43316321
Coord C2 exon
chr17:43316322-43316432
Length
316 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CCCATGTCCCTGGCTCCCAGGTG
3' ss Score
8.95
Exon sequences
Seq C1 exon
GTGTGTGGGGAGCAGCACCGCTTTGAAAAGCTGATGGAATATTTCCGGAATGAGGACAGCAACATCGACTTCATG
Seq A exon
GTGAGCTCAGGAGCCCAGCAGCCTGAGGCCTGGGCCAGGCCCTCTTGGGTGCAGGGAGCAGCTAGGGTCCTGGGTGCTGGGCAATGGGCTCTGCCCCCGCAAAGCGTAAGGACTGAGTGGTCAGTAGGGGAAGGGTGGATGTTGGCAGGGGGCTGGATTGAGGGAACATGGAGGTGAAATGTTGGGCAGGCCAAGGCTGGGAGTTAGTGGAGTGAGAACTGTGGAGAAGGAGGGAGGCTTGGGGTAAGTGGAGGTGGAAGGCATTGAGCAACCCCACCTAGAGGATCATAGATCTCCCCATGTCCCTGGCTCCCAG
Seq C2 exon
GTGGCCTGCATGCAGTTCATCAACATTGTGGTACATTCGGTGGAGAACATGAACTTCCGTGTCTTCCTGCAATATGAGTTCACCCACTTGGGCCTGGACCTGTACTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922-FMNL1:NM_005892:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(14.2=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(21.3=100),PF138701=DUF4201=PU(5.1=13.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGGGGAGCAGCAC
R:
AAGTACAGGTCCAGGCCCAAG
Band lengths:
182-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)