BtaINT0063147 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45511417-45511910:+
Coord C1 exon
chr19:45511417-45511491
Coord A exon
chr19:45511492-45511799
Coord C2 exon
chr19:45511800-45511910
Length
308 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GCCCCCCCCCCCCCCCACAGGTG
3' ss Score
13.08
Exon sequences
Seq C1 exon
GTATGTGGAGAGCAGCACCGCTTTGAAAAGCTAATGGAATATTTCCGGAATGAGGACAGCAACATCGACTTCATG
Seq A exon
GTGAGCTCAGGCCTGGGCTGGGCTACCCTCGGGTGCCAGGAGCAACTAAGAGCCTGGTATCTGGGATCTGGGCTAAGCTCCTGCCAAGTATGAGGACTGAGTGGTTGGTGGAGGAGGGGTGGATGTCAGCAAGAGGGAGGCTGGGAGGAAGGCGTGTGAGGGAAAATACGTATGGGACACAGCCTGATTAGTGGGGTGAGAAATAGAGCAAGGGTGGGGGACTTGGGGATAAATTAGGGGGTGGAAGTCACTGAACCCCCCACCAAGAGGATCATAGACCTGCTCACTGCCCCCCCCCCCCCCCACAG
Seq C2 exon
GTGGCCTGCATGCAGTTCATCAACATTGTGGTACATTCAGTGGAGAACATGAACTTCCGTGTCTTCCTGCAATACGAGTTCACGCACCTGGGCCTGGACCTGTACTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(13.0=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTGGAGAGCAGCACCG
R:
CTCCAAGTACAGGTCCAGGCC
Band lengths:
186-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development