RnoINT0061631 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91272769-91273201:+
Coord C1 exon
chr10:91272769-91272843
Coord A exon
chr10:91272844-91273090
Coord C2 exon
chr10:91273091-91273201
Length
247 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CTTGTGCTCCTGGCCCCTAGGTG
3' ss Score
10.58
Exon sequences
Seq C1 exon
GTGTGCGGGGAGCAGCACAGATTTGAAAAGCTAATGGAGTATTTCCGGAATGAAGACAGCAACATTGACTTCATG
Seq A exon
GTGAGCTTGGAGCCCTGGGGGCTGAGGACCAGCCGGGCCCTATTGCATGCTAGGAGCAGAGTCCGATTCTGGGTAGCTTGGCGGGTGGATGTGAGAGGAGTGGGGACTGGAGCAAGGGGACCTGGATGTTACAAGACTGAGTAAGTGGGATATAGAAAGGGAGGGAGGCTTGGGGACAAATGGGAAGGGAAGATATCAGCACCCCGAGTTAGAAGTCCTGAGATTTACTTGTGCTCCTGGCCCCTAG
Seq C2 exon
GTGGCTTGCATGCAGTTCATCAACATCGTGGTACACTCGGTGGAGAACATGAACTTCCGTGTCTTCTTGCAATATGAGTTCACTCACTTGGGTCTGGACCTGTACTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(12.1=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(18.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGCAGCACAGATTTGAA
R:
GGTCCAGACCCAAGTGAGTGA
Band lengths:
169-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]