HsaINT0065097 @ hg38
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45238564-45239065:+
Coord C1 exon
chr17:45238564-45238638
Coord A exon
chr17:45238639-45238954
Coord C2 exon
chr17:45238955-45239065
Length
316 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CCCATGTCCCTGGCTCCCAGGTG
3' ss Score
8.95
Exon sequences
Seq C1 exon
GTGTGTGGGGAGCAGCACCGCTTTGAAAAGCTGATGGAATATTTCCGGAATGAGGACAGCAACATCGACTTCATG
Seq A exon
GTGAGCTCAGGAGCCCAGCAGCCTGAGGCCTGGGCCAGGCCCTCTTGGGTGCAGGGAGCAGCTAGGGTCCTGGGTGCTGGGCAATGGGCTCTGCCCCCGCAAAGCGTAAGGACTGAGTGGTCAGTAGGGGAAGGGTGGATGTTGGCAGGGGGCTGGATTGAGGGAACATGGAGGTGAAATGTTGGGCAGGCCAAGGCTGGGAGTTAGTGGAGTGAGAACTGTGGAGAAGGAGGGAGGCTTGGGGTAAGTGGAGGTGGAAGGCATTGAGCAACCCCACCTAGAGGATCATAGATCTCCCCATGTCCCTGGCTCCCAG
Seq C2 exon
GTGGCCTGCATGCAGTTCATCAACATTGTGGTACATTCGGTGGAGAACATGAACTTCCGTGTCTTCCTGCAATATGAGTTCACCCACTTGGGCCTGGACCTGTACTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922:ENST00000331495:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(14.2=100)
A:
NA
C2:
PF0636711=Drf_FH3=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGGGGAGCAGCAC
R:
AAGTACAGGTCCAGGCCCAAG
Band lengths:
182-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development