HsaINT0065172 @ hg19
Intron Retention
Gene
ENSG00000161791 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:23698]
Coordinates
chr12:50050865-50055832:-
Coord C1 exon
chr12:50055749-50055832
Coord A exon
chr12:50050974-50055748
Coord C2 exon
chr12:50050865-50050973
Length
4775 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TGCCTGGCCCATCTCCCCAGGTA
3' ss Score
9.51
Exon sequences
Seq C1 exon
GTGGGTGCGGGAATTTCTGAATGATGAAAACAAAGGCCTGGATGTACTGGTGGATTACCTGTCCTTTGCCCAGTGTTCTGTCAT
Seq A exon
GTGAGTACCACCCCGGGGCTGAAGTTGGGGACCAGTTGGGGGAGGACATAGTTCCATTCTACTTTGATAAGGAAGGGTGAGAGTTCAACAATGAAGATGGAAATGGGAATCCTGGACAGGAAGGAGTAGCCCAAGCAGTGGTGTGGAAGTAGGCAGGCAAGCCCGGAGATGTCTGGGGATCAGTGAAGAATGGCACTTGGCTGGAGTAGAAGATAAGATGCATTTTGGAGAACAGGACAGAGAGATGGAAAGGGAGCTTGGAATCAGAACCCAAGGCATCCAAATGCCAAGCTGTGAGCAATCCAGGGAAATGTCCTGGCTTCTGGTAGAGATGCCTTGGTGGGATCCATTCATCTTTGCAGAGTTGAGTCTTCCAGAAGCAACTTTGGGTTTCCAGATGTGAGAAGGTTACTCCAGGTCATTGTTGAAGAACCCAGGAACAGTGAGTTCCTTTTGACCTGGATAGAAAAATGAAGTATTCAGGAGTCTTTTTCTAGCAGGCAGGGGGGCTTGGAGGCAGCCAGAAGTGAGTTAGCACAGAAAAGGCGGCCTGGTATAGTGGAAGGAATGAGAGCTCTTGAGTCAGACAAAGCTGGGTTTGGGTTTCAGTTCTGTTATTTACTATCTGTGTGACTTCAAAGCAAGTTTGTGTCTTCTTCTATGAAAGGAGATCCACATTCCAGGGTTGTTGTGAAAATTAGATGATAACGTGTGTTAAAGCACTTAGTATTATTTGGAACATACCGGGTCTGTATTGTGGTAGCAGATCTATTGTTAATTTCATTATTATTATTTAAAGTGGCATACCCTACCACAATTACCTGAATATATGAAATTACATAATAAACATAATGACCAACACATTTAGACTTACACCTAAGACAGGTCAGCCTTAGGGAGACCAATCTTCCCAGTTTGCCCATAACTTTCCCTAGTTTTCCCCAGCGTCCCAGGAAACTCCTCCATCCTAGGACTTAGCCCTGACATTTTTTTGAGACAGGGTCTTGCTCAGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACCACAGGCTTGACTTCCTGGGCTCAAGCAGTCTTCCTGCCTCAGTCCTGCCTCAGCCTTGCTGAGTAGCTGGGACCACAGGTGTATACCACCATGCTTAGCTAACTTTTTGTGTGTTTTTAGTAGGGACGGGGTTTCACCATGCTGCCCAGGCTGGCCTCGAACTCCTGGGCTCAAGCGATCCACCCTGCTTTGGCCTTCCAAAGTGCTGGGATTGCAGGCGTGAGCCGCTGCTCCCAACCAGCTTCCACTTTTCTAACTACTGTCCTTGCCCCCTTGGCCATTCTTCTTTGTCCAGCAGGTCTTCAGTGTCATCCCCTTAGGAATTTGATGCTTCTTCTATGTTCGGCGCCTCTCACCTTTTCCAGGTTATCCTGTTAAAACCAAGAGTGGCCCACTGCATTCTTGTCTCAGCAGAAGTCATACCTCGTGTGATTCTCTTATCTCCTAAAAAAAATTCTTTTTATAGAAAGAAATGAAAAACATTTGGTGAAATAATTTTTCTTAAAAAATTCAGAGCTTTTATAGTAAAAAATGTAGCTCATTTTTCCAAATAAGCCTCTCTCTCTTACTTGAAAAGCAAACAAATTCCAGCCACCCTAAACCAAGAGTACCCTGGAACCTCAGTATTGTAGTGTCCATGGCAATACCTTTGACTCTGTTTTTAAAAAAGAAGGACTTTGTGTGGGGGAGAGAATGTGTGTTTTAGGAAGGATTGAGAGGGAAAGGGTGAGGCTAAATAGAGTTGGAGTGAAGATAATTGTTTGTAAACTGCATATACCAGTACAAGAGGATACAGTGTTACTGATGGAATCAGCAAGCTGTTTCCCTGTCAGGAGGTTCCTCTGATGTCTACTTGAGAGCCCCATTAAACACCTCCTGATCATGAGGACACTAAAGCCTGCTCCCACTTCCTTTGGAACATTCTGACGTCTGTAAATATCCCTTCCTATTCCAGAAAGCCTCAACCTCTGTGCCTTTGACCCCATGTCTGAGCAGAATGCTTCTTGGGGGAGAAGAACCTGTAAGAGATGCTCCCTTAGTCTTTAATGACCTACATGGAGGAAGAGGACAAGAAGGAGGAGAGGGACTGTTTCTCAGAGGGGTATATCCTGAAGTGAGGATGATAAGAGAGGAGTCCCTGTGAGTTTGTGATCTTGGCCATCTTCCTTGTCCTGGCCACATTGACAAACTGCTGACGGTCGCTGGGTGCAGTGGCTCACACATGTAATCCCAGAGCTTTGGGAGGCCAAGATGAGAGATTGCTTGAGCCCAGGAGTTTTAAGACCAGACTGGGTAACATAGCAAGACTCCATCTCTACAAGAAAATTTTAAAAAATTAGCCAGGCATGGTGGCACGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATTGCTTAAGCCCAGGAGTTAGAGGTTACAGTGAGCCATGACTGTGCCACTGTATTCCAGCCTGGGCCACAGAGTGAGACCCTGTCTCTTTAAAAAATAATAATAATAATAATTGCTGATGGTGGAAGACATCTGTTCCAGGAGCAGAAAGTGACAAACCATTCAACTCCTGCAGAGGCTATACTACAGGACCCTGGTCTACAATCTCAACTTGTAATTTCTTCCCCCAGGGAAACTGAAGCCCAGGGAGCCTGTATACCTGAAAAACCTAGAAACCTCAAGTAGCCAGAACCATAGAGAACCTGGTCATTAAAACCCAGTGCTAAGATGGGGCAGTGGTGCTCCTCCAAACAATAAAGGACTGTCCCACTCTGGGTTTGCCAGAACCCCCTTTCCCTTCCATTTAGTCCTGCCATCCAGAATCAACTGGACTCCTTCAAAGCACTGAAGGGCCCTTTGGTTGCTGGCATTTGCCAGCTAGCAAGACCTGCAGTTGGCTCATTCCCCACCATTCCCTCTATGGGGCAGATTCTTCATGGGGAGCCACAGCTTCCCGGAGATGTCCCAACTAAGCTGGGAGTGCAGAAAGACTGCCAGCTCCCGAGTGGCCCATGGGGAGGACACTCCTTCTGGAATTTCCTGGCTAGTGGGGAGCAGAGGAGTTGGCCTCCATCAGCTTCCCATCTCCTTAGACTGCCCTCCTTGTTGCTGCCTGTGCTGCTTCTGCCGCTGTTCTGTGTTAGTGGCTCTTCCAGCTAGGATCAGGTCTCTGCTCCCCAGTTCTGCTTTCTCTCCTTGCTACCCCTGCTGCTTGTTGCCCTAGAGGCCTGAAGGGTGGGGGTGGGCTCACGGGGGGCCTTGGCACTGAATTTCTCCTGTGTATGTGCCTGTGTATGCGCATGTGTGTCCTTTCATGCTCCAGGTTTGACTTTGAGGGTCTGGAAAGTGGTGACGATGGTGCATTTGACAAACTCCGGTCCTGGAGCAGGTCAATCGAGGACCTGCAGCCACCCAGCGCCCTGTCGGCCCCCTTCACCAACAGCCTCGCTCGCTCTGCGCGCCAGTCTGTGCTCCGGTATGTGTGCTTTTGCTCTGCCCACCTGCCTCCCACCCTACCCTTCAGTGCAGGTCTCGGGTTCAGCAGTGAGTGCTCATGCTCCTCCCTCCACTCTTGCTTCCAGGCTCAGCTCTCTTGCCCTCTGCCTGCCAGTCTGTCTCTGGTCTGTCTTCTCTGTCTCCTTGACTCTGCCCAGCGGTCTGTCCTGGGTAAGTACATGGTCTCAGCTGCACTTACCCAACGTGGGGTTCCAGCTCTCCCCATTCCTCACCCCTCTCTGGGGGAGCCCTTCATTCCTCTCACTCTGCCATTCCTCCTGGGTCTCTTGAGCAGGGCACATCTCATACAGGTCCATGGCCTTCACTGGGTGATCCAGCTCCTACTCTCATTCTGTTTCCCTCTAGTTCTTCACTCTGCCCCTTTAGCTGCTTGGAGACCAGCTCCCACCCAACCTGGCTGCCCCTTGCATTCCCTTCACCTCTTCCTTCAGGCCTTTCTCTCTGAGGCTGCCACATGCTCATTTGTCTGCGGTGTCTTAAGAGCCGCCCTGCCTGGAGGTAGGCGGATGGACTGGATGACTTCTCAGAGCCCCTTCCTACTCTGGGAGGCTTTCCTTTGGGTCCCATGGCCCTTTCCTTGGTTTCTGTCTCTCTTGTGGCCATGCTTTCCTCCTAGTCTCCTTTGGGTTGTGTCCCTTGGACACTGTTGATTATTCTTGTCATGGATGAGCAGATACTGTATGTGTCTCCTCCCTTTTCCATGAAACATCACTGAGAGGGTGGAGGGGTGGTGCAAAGCCAGACATAGCCCTGTGGCCCAGCTGAAGCCTTTAGGGGTCAGCTCTGCCTTTTCTGTGATACAGAAGTGGGATGGGAGCCATGACGCTCTTGTCCCACAGATTGTGCAGAAGGTGCAGCAACTGGAAGTGGGTGGAGGGAATGCTCAAATGACTGTGTCTCTGGAGCCATCTCAGGGACTAGGAAGGCCTACACAACTACTATTTGTATTTTGAAGGATCTCTAGGGTTGGGGCACTGGTTATAAAACCGGGATCCTGAATAGTTGCTGACAAAGGCCTGTTTAAGGAGGTGAAAACAGGCTGACCACCCTGCCTCCTGCACCCTGTCCCTCTTGGCTGTTGGTACGAGGTGCTATTCCCTATTTTTTGCCACTGCTAAGGGGCAGCCTGCTGTCCGGGTGATGGTGAGTGTCCCTAGATGCTTCACTGGCAGCCTCAGCTCCCACCTGACTGCCTGGCCCATCTCCCCAG
Seq C2 exon
GTATAGCACTCTCCCTGGGCGCAGGGCCCTGAAGAACTCCCGCCTAGTGAGCCAGAAGGATGACGTCCACGTCTGTATCCTTTGTCTCAGAGCCATCATGAACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161791-FMNL3:NM_198900:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(21.0=89.7)
A:
NA
C2:
PF063718=Drf_GBD=PU(42.3=81.1)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)