MmuINT0065152 @ mm9
Intron Retention
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99158489-99159863:-
Coord C1 exon
chr15:99159711-99159863
Coord A exon
chr15:99158598-99159710
Coord C2 exon
chr15:99158489-99158597
Length
1113 bp
Sequences
Splice sites
5' ss Seq
CCGGTATGT
5' ss Score
9.2
3' ss Seq
CACTTGGCCCTATCCCCCAGGTA
3' ss Score
9
Exon sequences
Seq C1 exon
GTTTGACTTTGAGGGTCTGGAGAGTGGTGATGACGGTGCATTTGACAAGCTCCGGTCCTGGAGCAGGTCAATCGAGGACCTGCAACCGCCCAACGCCCTGTCGGCCCCCTTCACCAACAGCCTCGCTCGCTCTGCGCGTCAGTCCGTGCTCCG
Seq A exon
GTATGTGCGCGCTTACTCTGCCCCCTGCCTCCCACCCCAGCCCCAGCCCCGGTCTTGGTGACCCGGTGAGTGCTTACGCTCCCCCCTCCACTCTTGCTTCCAGGCTCAGCTCTCTTGCCCTCTGCCTGTTCGCCTGTCTCTGATCTGTCCTCTCTCTCCCTGACTCTGCCCAGCGGTCTGTCCTGGGTAAGTACATGGTCCTCCTCTGTCCCCCCTGATGCTCCAGCTGTCCCCTTCCCCGTCCTCACTCTCTCCTAGCCATTCCTTCCTGACCTCAGGCAGGGCTTGGGCTTTACTGGCCAGTTCAGCTCCTGCCCCCAAACCCATTTCCCCCTTAACTCTCTCTTTTCCCATCAGCTCGTAGAGAACAGCCCCAGCTACGCGCTGGCTCCTTCCTTTCCCTTCCCTTTCCCCTTCAGGTCTTTTCTCTCCAAAGTTGTGCCTTCTTTTGTCTGTGGTTTCACAAGAGCGGTCCTGTGGTGGACTGGATCACTTTGCAGAGGCCCTGTTACTCAGAGGCTGTCCTTGTAGATCCGTAGCCTTTCCTTTGACCTGTGTCTCTCTCGTGACTCTTCTCTTCTCGGATTTTGTGTCATGGACACTGCTCATCATTCTGGTCTTGCAGGAGCAGATTCTGTATGTGCTTCCCCCTCTCACAAAGCATTAAGGCAGTAGAGAGATGATACAGAGCCAGGCATAGCCTGAGCCTTCATAAGGCCTGTGTTTTCTGCTCTGCCTTTGGGGGACTTGAGAATGAGATGAGCACAAAGACTCACCTGCCCCACTGAATGTGCCAAAGATGTAACTAAACGAGCATATCTTTGTGACCTACCCCAAGAACTACAAATTCCTCAAAACAATTTTGTATTTCAGAGGTCTCTGGGGTTAGCATGATTTTGACAGAGTATAGAGCTGGGGCCCTGGGCAGTTGCCAACAAAGACATGTACCAAAGAGGTGAATGGCTGGCTTCACTGCCTTCTGCACCCTGGCTGTCTTGGCATTTGGTACAAGGTCTTCTTTCCTCCATTTCTGCTGTTTCTACAGGGCAGCCTGGTGGTCTAACCTTCACCAGCAGCCTTGTCCCTACCTGATCACTTGGCCCTATCCCCCAG
Seq C2 exon
GTACAGTACTCTCCCTGGCCGCAGGGCCCTGAAGAACTCCCGCCTGGTGAGCCAGAAGGATGACGTCCATGTCTGCATCCTTTGTCTCAGAGCCATCATGAACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008-Fmnl3:NM_011711:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF063718=Drf_GBD=PU(41.4=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGACTTTGAGGGTCTGGAGA
R:
CTGATAGTTCATGATGGCTCTGAGA
Band lengths:
262-1375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: