BtaINT0063206 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016593 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr5:30356801-30361035:+
Coord C1 exon
chr5:30356801-30356884
Coord A exon
chr5:30356885-30360926
Coord C2 exon
chr5:30360927-30361035
Length
4042 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
AGAAGCCCCCTCTCCCCCAGGTA
3' ss Score
7.11
Exon sequences
Seq C1 exon
GTGGGTGCGGGAGTTTCTGAATGACGAAAACAAAGGCCTGGACGTGTTGGTGGATTACCTGTCCTTTGCCCAGTGTTCTGTCAT
Seq A exon
GTGAGTACCACCTGGGACCAGGGCGGGGGGCCCCATTCTGCTTTGACTGGAACTGCCAGTAGTGAAGGTGGAATGGGAACCCCAGGCAGCAGTCTGGGTGTGGGCAGGTGGCCACGGGGTTGTCTGAGGTCAGTGAAGAGTGCCAGGTAACTGGAGTAGAAGGTGCGTTTTGGGGAGCAGAAGGCAAGGTGTGGAAGGGCAGCTCAGGATCCTAACCCAGAAGACCCAGACTCCATGCTGGGAGCTCCCCAAGGAGGTTTCCTGGCCTTTGGGAGAGAGGCCCCCCGCAGGGTTCGTTTACTTAGGGAGAGCTTGGTCTTCGCAAAGCCACTTTAGGTCTCCAGCTATAAGAGGGTTTCTCCGTGTCACCCCAGAAGCAGTGAGCATGACCTTTGACAGACTGAAAATGAAGCATTCAGGAGACTTTTCAAGCAGGCGGGGGTTTGGAGGCAGCTGGAAGTGAGTTAACGCAGAGGAAAAGGCAACGTGGGCTGGGGTGGGGAGTGGAGGGAGCGAGGGCTTTCAAGGCAAAGCCTGGCGTGGGTCTCTTCAGTCCTTTACTATCTGTGTGACCTCTGGAAAGATTGTTGAGGTCCTCTTATGTAAGAGGGGATCCATGTTACAGGGTTGCTGTAAGCATTAGATGATACTGTGTGTAAAGCAGTCTATAGTATTTGGAACGTAGGCTGTACTGTGGTAGCCACTTTTTATTTGTTAATTGTTGCTGTTTAAGGTGTTCCCTACCATAATTACCTAAATATATGGAAAGAGGGATTATATTGATCATTCACAGCATGACCAACACATGCAGACCTGTACCCTAGAGCACTTGGGTGACCGATCATCCCAGTTTACCCGTGATTTTCCCCACATGACTTTCCCCAGTGTTAGTGCTGAAAGTCCCTCATCCTGGGGAACTCCTCAGTCCGGGGACTCCGCCCCAGTCATGAATTTCACTTTTCTTGCTGCCGTCCTTGCCCTGGGCCATTCTCCTTCCTCAGCAGGTTTTTCCCCTCATCTCCTTAAGAGTTTAGAACTATTGCCCCTCCTGGGTTTGGCCTTAGTCATTTTTACCAGGTCATCCCATTAAAACCAAGAGTGACCCACTCCCCCTTCCCATCCCTGCAGAAGTCAAGCCTTCTATCCCTTAAAAAAAAAAAAAAAAACTTACTCTTTTTATAGAAAGAAATGAAAAATATTTGCTGAAGCGATTTAAAAAAAATAATTCAGAGCTTTTATAGTAAAAGATGTAGATCATTTTTCCAAATAAGCCTATCTTGTTTGGAAAGCAAATAAATTCCAGCTGCTTGAAACCAAAATACCCTGGAACCTCAGTATTGTAGTGTCCATGGCAGTACCTTTGACTGTGTTTTTAAAAGAAAGACTCAGGGCAGGCAGAGGGTAGGTAAGAGTGTGTGTTTTGGGAAGGGTTGAGAGGAAAAGAGTGAAGCCAAATAGAGTTTGAGTAAAGGCACTTAATTTGTACACTGAACGTCCCAGAGTGGGGTTGGAGTGGGGAATACTATTTTTGATGGAGGGAGGGCACTGGCAAGCGGTTTCCCTGTCCTGGAGACTCCTCCGAGGTCCACTTGAAAGCCCCATCAAACATCTGACCGTCAGGATCCTGAAGTCTGCTCCTACTTTCTTGGAAACATTCAGGCATCTGCAGATACCGCTTCCTATTTCAGAAAGCCTTGGCCTCTGTGACTTTGACCCTGGTGCTGTGCATATTTAAGGAGCCTGTTGGAAATGCTTGTTCTGTCTTGGATGACCCTCTTCAGGGAAGAGGACAGGAAAGGGGAGTGGGGCTTGTTTCTCAGAGGGGGAGATCCGATGAGGGGACCTGCAAGGGAGAAGGCCCTGTGGGTTCATCATCTTGAGCTGTCCTCTTTATTCTGGCCACACTCCCAAACTGCTGATTGGGGAAGACAGCTGGTCCGAGAAGCAGAAAGTGACAAAGAAGCCGTCCCAACTCTCTTAGGGACTAAGGACCCCAGTTCACATCTCTGCCCTCCCCCAAGGGAAGCTGCAGCGCGAGGAGCCTCTGAGCCAGGAAAACCTAGAAACCTCAAGTAGAATCATGGAGAACCCAGCCATCAAAACTCAGTGCTGGGATGGGACTGTAGAGTTCCTCCTGAACATGGAGGCCTGTCCCACTCTGGCTTCACCAGGACCCCCATCCCCCTCCACTCAGACCTGCCCTCCTGAACATAATCCAGAACCACCCAGGCCCCCTCAGGGCATTGAGAGGCCTCTCCGGCAGCTGCTGTCGGCTGCCTAGTAGTACCTGCAGTTGTCCGGTTCCCCGCCGCCGCTCTTCGGGCTGACTCAAGGGGACCCATGGCTTCTCTGAGATGTCCTTTCTATGGCTGGAGGTGCAGAAAGACTACCAGCCCCCCGAGTCCCTTCAGGCTCATGGGAGGTGACTCCTGGAGTTGCTTGGCCAGTGGGGAGCCGCAGCTGGCCTCCCAGCATCCCCATCTCCTCAGATGCCCCTTCTGGGCATGGCTCATGGCGCCTCTGCCCTGCTCAGCACACTTGTGCCAGTGGCTCTCCCGGCCAGGGCTGGGTCTCTGCTGCCCGGTTCCGCTTTTCCTTCTGGCTGCCCTTGCTTCTTGTGGCCCTCAAGGTCTAACGGACGGGAGTGGGCCTGCCAGGGGCTTGGCACTGAATTTCTCCTGTGTGCGTGCATGTGTGTCCTTTCCTGCTCCAGGTTTGACTTTGAGGCTCTGGAGAGTGGTGACGATGGTGCGTTTGACAAGCTCCGGTCCTGGAGCAGGTCTATCGAGGACCTGCAGCCACCCAGCGCCCTGTCAGCCCCCTTCACCAACAGCCTCGCTCGCTCTGCGCGCCAGTCTGTGCTCCGGTATGTGTGCTCTTGCTCTGCCCGCCTGCCTCCCACCCTCGCCCCCATCCGTGCAGGTCCTGGGTAACGGCGGTGAGTGCTCACGCGCCTCCCTTCACTCTTGCTTCCAGGCTCAGCTCTCTTGCCCTCTGCCTGCCAGTCTGTCTCTGGTCTGTCCTCTCTGTCCCCTGACTCTGCCCAGCGATCTGTCCTGGGTAAGTACATCCCCCTCAGCTGTGCCCTCCCCTCTCGTCTCCCCCTCTCTGGGGGCCCCTCCATTCCTCACTCTCACTCTGCCATTCCTCCAGGCCCCTGGGCAGGGCTTGTCCTCATCCAGCTCCTTGGTCTTCACCGGCTGGTCCAGCACCTGCCTTCATGTCTGTTTCCCTCTGCTCCATCAGCTGCCCGGAGACCACCCCCCACCAGCCTGCTGCTGCTCACCTTTCCCTCACTTCTTCCTTTAGGCCTTTTTTCCTCCAAGGCTGTAGCGTGTGCGTTGGTCTGCAGTAGCTGAAGAGCTGTCCTGCCGGGATGCAGGTGGATGGACTAGATGATTTCTCAGAGCCCCTTCACAGAGGGAGGCTTCCCTTTGGGCCCTGTGGCCCTTTCCATGATTTCTCTCAGCCATGCTTTTCTCCTTGTCTCCTTTGGGTCTTGCCCCTGACACTGCTCATCATTCTAGTCATGCATGACCAGATACCATTTGTGTTTCCTTTATTTCCCATGAAACATCACTGGGGGCAAAGTCAGAGGTCGCCCCAGCCCTCTTGTAGCCTCTGGGGTCTGCTCTGTCTTTTCTAGGACCTAGAAGTGGGGTAGGAGCCAAGGTGCCCCAGCCCCAGGGGATGTGTAGAAGATGCAGTGACTGGGAGGAGGAGGAAGGAGGGCTCAGATGGATGTCTCCTGGACCCATGCTGAGGTCCAGGAAGGCCTGCACAGCTCCTGTTGTGTTTGGAGGAGCTCTGGGCTTAGGATGGTTTGGGCACTGGTTTTAAAGCTGGTGTCCTGGAGATTTACTGACAAAGACCTGCTCCAGGGAGGTGAAAACAGTGGAGCACCTGCCCCCTGCACCTTCTCTCTCAGGGCTATTGGTGCAAGGTCCTCCATCCCCCTTTCCTCCTGCTGCTGAGGGGCAGCCTGCTGTCTGGGTGATGCTGCATGCCCCCGACCCTTCACCAGAAGCCCCCTCTCCCCCAG
Seq C2 exon
GTACAGCACTCTCCCTGGGCGCAGGGCCCTGAAGAACTCCCGCCTGGTGAGCCAGAAGGATGATGTCCACGTGTGTATCCTTTGTCTCAGAGCCATCATGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016593:ENSBTAT00000022075:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(21.0=89.7)
A:
NA
C2:
PF063718=Drf_GBD=PU(42.3=81.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]