RnoINT0061675 @ rn6
Intron Retention
Gene
ENSRNOG00000056297 | Fmnl3
Description
formin-like 3 [Source:RGD Symbol;Acc:1583854]
Coordinates
chr7:140992496-140996373:-
Coord C1 exon
chr7:140996290-140996373
Coord A exon
chr7:140992605-140996289
Coord C2 exon
chr7:140992496-140992604
Length
3685 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CACCCTACCCTGTCCCCCAGGTA
3' ss Score
9.71
Exon sequences
Seq C1 exon
GTGGGTAAGGGAGTTTCTCAATGATGAGAACAAAGGCCTGGATGTGCTGGTGGATTACCTGTCGTTTGCCCAGTGTTCTGTCAT
Seq A exon
GTAAGTACCACAAAGTTTAGGGTTGGGGACTCACTGGGAAGCAGACAGTCCCAGTGTACTTAGAAAAAGAGTGAGGGCTGGGAATGCAAAGCAGCAGAACATTGCCTGCCATGTGCTGAGGTTGAGCTTTCAGTCTCCAGCATGGGAGGAAATGGGGTGGGAAAGAAGAAAAAGGCCGAGTAAGAGGCCAACAGAGGAGATGGGAATGGGCATCCCCAGCACAATAGCTCAGGGGTTGCTGCAGAAGTGAGCAGGCAAGACAAGGGGTCAGCAGGGATTGGGAAGTTAGCTGGAACAGAAGAGAAGAGAACAGTATGGAAAGGAAGCTTGGAGTCGGAAGCCAAATGACCTAAGTGCCAAGCTACAGGCTCTCGGAGGAAATGTAGCTCCTGGCGAGATGGCTTCCTAGGGTTTAGTAATTTCAACAACATTTCTTCCATGAGGAAGCTTGGGCCCTGAGATGTGAGAGGGTTACTACAGGCCAATGGTTGAGGAAGATCAGTGAGCAGGACTTCGACTTGAACAGATCGAAGAAGTATTTGGGGTCTCCCAGATATCCTTTTCACATGGAGGTAGTCAGCTATTGGTTAGCTCGGGAGAGCAAGCCTGGCGAGGTGCAGTGAATGAGAGCTTTTAGAGTCAAAGTTGTGTTGAGCACTATCTATGGAACCTCAAGTCCCTTTGTCCTCCTGACTGACAGATTAGATGAGAAGGTGTGAATCCCATTTAGCATCTGGAATGCACTAGGGCCTCCGCTGCTGGTGGCTTCGATGTTATTACCCAGGTGAGAAGCCTGCCTATAGTTTTTGGACATAGAGAAAGAAGGCTGACCTATGATAGTGATAGTAAATGAAGTTAGCAACATATGCAGGCTTACACTTCAGACAAGTCAGCCTAAGGAGGATGGGTCCCAGCTTTGCTCTCAACTTGCCATGGTTCCCGAACTAAAAGTCTCTAGTCTGGAGAAAGCTGGGTCTTGAACTTTGGACCTTGCCTAGACTATTGCTTTTCCACTATCCCTGCCCTTATAACTCTTCTTGGTTCAGTGCATTTCCTCAAGGGGGCCTGGTAATATCTCCCGGGTTCAGCTTCCCATCCCCTTTCCTGGGTCATCCTCTGTAAAACTGAGAGTCACCCACTTCCCATCCACATCTCTGTGGAAGCCATACTTCATGATCTTCCTGTCCTTTTAAATAATCTTTTTATGGAAAGAAATGGGCAAAATTTTGCTTAAGTGAATTTTTAGTTCAGAACTTTTATAGTAAAAAGATGTAGATCATTTCACCAAATGTGCCTGTCTTTCTTGAAAAAGCGAACAACCCCATTGCTCCAGACCAAGGCTACACTTTGGTGTCCAGGGCAGTCAGTGCCTTTGAAAGTAGAGTCCAGGTAACAAGAGCCAGAGGCTTGGAAGGCCTGGGGGAAAGGGATGAGGCCATGGCTGGGTCACCATTAAGTGCCTCCTGCTGTCAGGACTGTTCCTGACCAGTGCAGCCTCACCTCTGTGGGTGTCACTTGTTCCAGAAACCCCAGCCTTGACACTGGGCATTCATGATGGGCAAGATGTCCTATGGGGAAAAGCCTTTGAGATGTGCCCTAGTTCTCAGAGTTACAGGGGTACAGAGCAGGAGGAAGAGGGGAGGAGAGTGCTTTTTGGGGTGTGCACTCTGAGGGGCAGGTATGTAAGAAAAGGCCCTGAGTGCTGTGTGCTGTCAGCTGATCTCTCTGCTCTGGACATAACTGCCTATGGTAAGAGACCTGTTGCAGGAAGTAACCAAAAATAACACTCACTTCCTCAGGGGCAAGAGCTCCTCCCTCTTTCAGTCTCAGCTCACAGTTCTAGGGAAGCTGAAGCTGAGGAGGAAGACATAGAAGCTCAGTCATAGAACATCCGCCATTCAGAGGGCTAGGCCTGGGGTGTAGCCCACTAGGAGACCTATTAGCATACTGGCCTGGCAGGAGACCCCAGCTCACTCCTCAGCACTGAAAAGCTAAACAAGCCACAGAAGCCATTGGTAGGGTGGGCAGTGGTGTACTTGCTGAGCTTCAAGACCTGCAGTTGCTCATTTCCCTCCATTCATTATCTTTGGAACAGATGTTTTAAGTAGGCATGGTGACTTGAGGCATCCCACTTGAGGCTAGGAGCACAGGAAGCCTGACAGCCCCCACAGACAGCCCTAAGGCCATGGGGAAGCCTTCAGATCCCCTCTGCTAGAACTGCCCAAGCCTTCTCAGCCCTGTCGGTAGCTCCAACCAGGTTCAGGTCTCTGATGCCTAATTCTGCTTCCTCTTCTTGCTGCCCCTGCTTTTTGTTTGCTACAGAGGCCTGAAGAGGGGGAGGTGGGCTTGCTGGGGGCTTGGCACATAATTTCTCTTGTATATGTGCCTGCGTGTGCGCATGTGTGTCCTCTCATGCTCTAGGTTTGACTTTGAGGGTCTGGAGAGTGGTGATGATGGTGCATTTGACAAGCTCCGGTCCTGGAGCAGGTCAATCGAGGACCTGCAACCGCCCAACGCCCTGTCGGCCCCCTTCACCAACAGCCTCGCTCGCTCTGCGCGCCAGTCCGTGCTCCGGTATGTGCGCGCTTACTCTGCCCACCTGCCTCCCACCCCAGCCCCAGTCCAGGTCTTGGTAACCCGGTGAGTGCTTATGCTCCTCCCCAACTCTTGCTTCCAGGCTCAGCTCTCTTGCCCTCTGCCTGTTCGCCTGTCTCTGATCTGTCCTCTCTGTCTCCCTGATTGCCCAGCGGTCTGTCCTGGGTAAGTACATGGTCCTCAGCTGTGCTACCCCTGATGCTCCAGCTCTCCCCTTCCCCCGTCCTCACTCTGTCCTAGCCATTCCTTCCTGACCTTGGGCAGGGCTCCAGCTATACTGGCCAGTTCAGCTCCTGCCCCCACACCCACTTCCTCAGCTCTCACTTTTCCCATCACCTCTTCGAGAACAGACCCAACTACCTGCTGGTTCCTTCCTTTCCCTTTCCCCTTCAGGTCTTTTTTCTCCAAAGTTGTGCCTTTGTCTGTGGTGGACTGGATCACTTCGCAGAGCCCCTGTTACTCAGAGGCTGCCCTTGTAGAGCCATTAACCTTTCCTGTGACCTAAGTCTCTCTTGCGGCTCTTCTTCTCTTCTTGGATTTTGCATCATGGACACTGATCACCATTCTGGTCTTGCAGGAACAAATTCTGTATGTGTTGCCTCTTCTCATAAAACATTGAGGTAGTGAGAGGTGATACAAAGCCAGGCATGGCCCCAAGCCTTTTCTAAGACCTGTGTAGGTCTGCTCTGCCTTTGGGGTACTTCAGAATGAGATGAGTACAAAGACGCACCTGTCCCACGGAATGTGCCAATGTGTCACTAAACAAGGGAGGAGGGACTCTCGGGTACATGTCTTTGTGACCTATCCCAAGGACTGCAGAGTCCTTAAAACAATTTTGTATTTCAGAGGTCTCTGGGGTTAGCATGATTTTAGCAGAGGATAAAGCTGGCTAGGGTCCTGGGCAGTTGCCAAAAAAGGCCTGTACCAAAGAGGTGAACGATGGCTGACTTCACTGCCGTCTGCACCCTGGCTGTCTTGGCATTTGTTACAAGGTCTTATTTCCTCCCATTTCTGCTCTTTCTACAGGGCAGCCTGGTGGTCTTTCACCATCAGTCTTGTCCCTACCTGATCACCCTACCCTGTCCCCCAG
Seq C2 exon
GTACAGTACTCTCCCTGGCCGCCGGGCCCTGAAGAACTCCCGGCTGGTGAGCCAGAAGGATGATGTGCATGTCTGCATCCTTTGTCTCAGAGCCATCATGAACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056297:ENSRNOT00000092068:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(25.5=93.1)
A:
NA
C2:
PF063718=Drf_GBD=PU(41.4=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]