RnoEX0036422 @ rn6
Exon Skipping
Gene
ENSRNOG00000056297 | Fmnl3
Description
formin-like 3 [Source:RGD Symbol;Acc:1583854]
Coordinates
chr7:140992496-140996373:-
Coord C1 exon
chr7:140996290-140996373
Coord A exon
chr7:140993716-140993868
Coord C2 exon
chr7:140992496-140992604
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGTGTCCTCTCATGCTCTAGGTT
3' ss Score
11.45
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
GTGGGTAAGGGAGTTTCTCAATGATGAGAACAAAGGCCTGGATGTGCTGGTGGATTACCTGTCGTTTGCCCAGTGTTCTGTCAT
Seq A exon
GTTTGACTTTGAGGGTCTGGAGAGTGGTGATGATGGTGCATTTGACAAGCTCCGGTCCTGGAGCAGGTCAATCGAGGACCTGCAACCGCCCAACGCCCTGTCGGCCCCCTTCACCAACAGCCTCGCTCGCTCTGCGCGCCAGTCCGTGCTCCG
Seq C2 exon
GTACAGTACTCTCCCTGGCCGCCGGGCCCTGAAGAACTCCCGGCTGGTGAGCCAGAAGGATGATGTGCATGTCTGCATCCTTTGTCTCAGAGCCATCATGAACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056297_MULTIEX1-2/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(25.5=93.1)
A:
NO
C2:
PF063718=Drf_GBD=PU(41.4=78.4)
Main Inclusion Isoform:
ENSRNOT00000092068fB5626
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTAAGGGAGTTTCTCAATGA
R:
AGTTCATGATGGCTCTGAGACA
Band lengths:
188-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]