BtaEX0014809 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016593 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr5:30356801-30361035:+
Coord C1 exon
chr5:30356801-30356884
Coord A exon
chr5:30359598-30359750
Coord C2 exon
chr5:30360927-30361035
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGTGTCCTTTCCTGCTCCAGGTT
3' ss Score
11.61
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
GTGGGTGCGGGAGTTTCTGAATGACGAAAACAAAGGCCTGGACGTGTTGGTGGATTACCTGTCCTTTGCCCAGTGTTCTGTCAT
Seq A exon
GTTTGACTTTGAGGCTCTGGAGAGTGGTGACGATGGTGCGTTTGACAAGCTCCGGTCCTGGAGCAGGTCTATCGAGGACCTGCAGCCACCCAGCGCCCTGTCAGCCCCCTTCACCAACAGCCTCGCTCGCTCTGCGCGCCAGTCTGTGCTCCG
Seq C2 exon
GTACAGCACTCTCCCTGGGCGCAGGGCCCTGAAGAACTCCCGCCTGGTGAGCCAGAAGGATGATGTCCACGTGTGTATCCTTTGTCTCAGAGCCATCATGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016593_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(21.0=89.7)
A:
NO
C2:
PF063718=Drf_GBD=PU(42.3=81.1)
Main Inclusion Isoform:
ENSBTAT00000022075fB2821
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGGAGTTTCTGAATGACG
R:
TGGTAGTTCATGATGGCTCTGA
Band lengths:
187-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development