BtaEX0014810 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016593 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr5:30359598-30361035:+
Coord C1 exon
chr5:30359598-30359750
Coord A exon
chr5:30359861-30359944
Coord C2 exon
chr5:30360927-30361035
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCCTTCACTCTTGCTTCCAGGCT
3' ss Score
8.78
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTTTGACTTTGAGGCTCTGGAGAGTGGTGACGATGGTGCGTTTGACAAGCTCCGGTCCTGGAGCAGGTCTATCGAGGACCTGCAGCCACCCAGCGCCCTGTCAGCCCCCTTCACCAACAGCCTCGCTCGCTCTGCGCGCCAGTCTGTGCTCCG
Seq A exon
GCTCAGCTCTCTTGCCCTCTGCCTGCCAGTCTGTCTCTGGTCTGTCCTCTCTGTCCCCTGACTCTGCCCAGCGATCTGTCCTGG
Seq C2 exon
GTACAGCACTCTCCCTGGGCGCAGGGCCCTGAAGAACTCCCGCCTGGTGAGCCAGAAGGATGATGTCCACGTGTGTATCCTTTGTCTCAGAGCCATCATGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016593_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF063718=Drf_GBD=PD(1.6=9.5)
C2:
PF063718=Drf_GBD=PU(42.3=81.1)
Main Inclusion Isoform:
ENSBTAT00000022075fB2822
Main Skipping Isoform:
ENSBTAT00000022075fB2821
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGACAAGCTCCGGTCCTG
R:
CATCATCCTTCTGGCTCACCA
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development