HsaEX0026050 @ hg19
Exon Skipping
Gene
ENSG00000161791 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:23698]
Coordinates
chr12:50050865-50052377:-
Coord C1 exon
chr12:50052225-50052377
Coord A exon
chr12:50052034-50052118
Coord C2 exon
chr12:50050865-50050973
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCCTCCACTCTTGCTTCCAGGCT
3' ss Score
8.28
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTTTGACTTTGAGGGTCTGGAAAGTGGTGACGATGGTGCATTTGACAAACTCCGGTCCTGGAGCAGGTCAATCGAGGACCTGCAGCCACCCAGCGCCCTGTCGGCCCCCTTCACCAACAGCCTCGCTCGCTCTGCGCGCCAGTCTGTGCTCCG
Seq A exon
GCTCAGCTCTCTTGCCCTCTGCCTGCCAGTCTGTCTCTGGTCTGTCTTCTCTGTCTCCTTGACTCTGCCCAGCGGTCTGTCCTGG
Seq C2 exon
GTATAGCACTCTCCCTGGGCGCAGGGCCCTGAAGAACTCCCGCCTAGTGAGCCAGAAGGATGACGTCCACGTCTGTATCCTTTGTCTCAGAGCCATCATGAACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161791-'9-8,'9-7,10-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF063718=Drf_GBD=PU(42.3=81.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTGGTGACGATGGTGCA
R:
ACTAGGCGGGAGTTCTTCAGG
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)