HsaEX0026054 @ hg19
Exon Skipping
Gene
ENSG00000161791 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:23698]
Coordinates
chr12:50050865-50055832:-
Coord C1 exon
chr12:50055749-50055832
Coord A exon
chr12:50052225-50052377
Coord C2 exon
chr12:50050865-50050973
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGTGTCCTTTCATGCTCCAGGTT
3' ss Score
10.17
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
GTGGGTGCGGGAATTTCTGAATGATGAAAACAAAGGCCTGGATGTACTGGTGGATTACCTGTCCTTTGCCCAGTGTTCTGTCAT
Seq A exon
GTTTGACTTTGAGGGTCTGGAAAGTGGTGACGATGGTGCATTTGACAAACTCCGGTCCTGGAGCAGGTCAATCGAGGACCTGCAGCCACCCAGCGCCCTGTCGGCCCCCTTCACCAACAGCCTCGCTCGCTCTGCGCGCCAGTCTGTGCTCCG
Seq C2 exon
GTATAGCACTCTCCCTGGGCGCAGGGCCCTGAAGAACTCCCGCCTAGTGAGCCAGAAGGATGACGTCCACGTCTGTATCCTTTGTCTCAGAGCCATCATGAACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161791_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(21.0=89.7)
A:
NO
C2:
PF063718=Drf_GBD=PU(42.3=81.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTGCGGGAATTTCTGAA
R:
AGTTCATGATGGCTCTGAGACA
Band lengths:
188-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)