MmuEX0019406 @ mm9
Exon Skipping
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99158489-99162501:-
Coord C1 exon
chr15:99162418-99162501
Coord A exon
chr15:99159711-99159863
Coord C2 exon
chr15:99158489-99158597
Length
153 bp
Sequences
Splice sites
3' ss Seq
CGTGTCCTCTCATGCTCTAGGTT
3' ss Score
11.18
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
GTGGGTGAGGGAGTTTCTCAATGATGAGAACAAAGGCCTGGACGTGCTGGTGGATTACCTGTCATTTGCCCAGTGTTCTGTCAT
Seq A exon
GTTTGACTTTGAGGGTCTGGAGAGTGGTGATGACGGTGCATTTGACAAGCTCCGGTCCTGGAGCAGGTCAATCGAGGACCTGCAACCGCCCAACGCCCTGTCGGCCCCCTTCACCAACAGCCTCGCTCGCTCTGCGCGTCAGTCCGTGCTCCG
Seq C2 exon
GTACAGTACTCTCCCTGGCCGCAGGGCCCTGAAGAACTCCCGCCTGGTGAGCCAGAAGGATGACGTCCATGTCTGCATCCTTTGTCTCAGAGCCATCATGAACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(21.0=89.7)
A:
NO
C2:
PF063718=Drf_GBD=PU(41.4=78.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTGAGGGAGTTTCTCAA
R:
AGTTCATGATGGCTCTGAGACA
Band lengths:
188-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types