MmuEX0019407 @ mm9
Exon Skipping
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99158489-99159863:-
Coord C1 exon
chr15:99159711-99159863
Coord A exon
chr15:99159525-99159607
Coord C2 exon
chr15:99158489-99158597
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCCTCCACTCTTGCTTCCAGGCT
3' ss Score
8.28
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTTTGACTTTGAGGGTCTGGAGAGTGGTGATGACGGTGCATTTGACAAGCTCCGGTCCTGGAGCAGGTCAATCGAGGACCTGCAACCGCCCAACGCCCTGTCGGCCCCCTTCACCAACAGCCTCGCTCGCTCTGCGCGTCAGTCCGTGCTCCG
Seq A exon
GCTCAGCTCTCTTGCCCTCTGCCTGTTCGCCTGTCTCTGATCTGTCCTCTCTCTCCCTGACTCTGCCCAGCGGTCTGTCCTGG
Seq C2 exon
GTACAGTACTCTCCCTGGCCGCAGGGCCCTGAAGAACTCCCGCCTGGTGAGCCAGAAGGATGACGTCCATGTCTGCATCCTTTGTCTCAGAGCCATCATGAACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF063718=Drf_GBD=PU(41.4=78.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGACAAGCTCCGGTCCTG
R:
GACGTCATCCTTCTGGCTCAC
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types