RnoEX0036423 @ rn6
Exon Skipping
Gene
ENSRNOG00000056297 | Fmnl3
Description
formin-like 3 [Source:RGD Symbol;Acc:1583854]
Coordinates
chr7:140992496-140993868:-
Coord C1 exon
chr7:140993716-140993868
Coord A exon
chr7:140993530-140993612
Coord C2 exon
chr7:140992496-140992604
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCCCCAACTCTTGCTTCCAGGCT
3' ss Score
7.44
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTTTGACTTTGAGGGTCTGGAGAGTGGTGATGATGGTGCATTTGACAAGCTCCGGTCCTGGAGCAGGTCAATCGAGGACCTGCAACCGCCCAACGCCCTGTCGGCCCCCTTCACCAACAGCCTCGCTCGCTCTGCGCGCCAGTCCGTGCTCCG
Seq A exon
GCTCAGCTCTCTTGCCCTCTGCCTGTTCGCCTGTCTCTGATCTGTCCTCTCTGTCTCCCTGATTGCCCAGCGGTCTGTCCTGG
Seq C2 exon
GTACAGTACTCTCCCTGGCCGCCGGGCCCTGAAGAACTCCCGGCTGGTGAGCCAGAAGGATGATGTGCATGTCTGCATCCTTTGTCTCAGAGCCATCATGAACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056297_MULTIEX1-3/3=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF063718=Drf_GBD=PD(2.7=21.4)
C2:
PF063718=Drf_GBD=PU(41.4=78.4)
Main Inclusion Isoform:
ENSRNOT00000092068fB5627
Main Skipping Isoform:
ENSRNOT00000092068fB5626
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATCGAGGACCTGCAACC
R:
GGCTCTGAGACAAAGGATGCA
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]