GgaINT0047746 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37131509-37133043:+
Coord C1 exon
chr7:37131509-37131592
Coord A exon
chr7:37131593-37132890
Coord C2 exon
chr7:37132891-37133043
Length
1298 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
AACATTTCTGTTTCCTTCAGGTT
3' ss Score
11.29
Exon sequences
Seq C1 exon
GTGGGTCAGAGAGTTCTTGAATGAAGAAAACAAAGGCCTGGATGTGCTGGTGGAGTACTTGTCATTTGCACAGTATGCAGTCAC
Seq A exon
GTAAGTAAGACTTGCCTCTGCTGGGGCTTTAAGGTCCCTTCCAAACCAAGCTATATCCCATGGTTCTGTGATCTGTAAGGTCCCTTCCAACACAAGCCATTCCATAGTTTTATGATTACTTTTAAGGCCATGCTAACATGGATTTTAGCTTTGGAGCCTCAGACTGTCTTAGGGTATAGTGCAAAACCAATTCAGGCACTGCCTGATGTGTTCCAAGCCACATCCCCACCCTGACCACTTCCCACTTTGCCATTCTGACACACAGCCAGCTCGGAGCCGGATTTAGTCATTTAGGTAATAGACCATTAAATACACTCTGCTAAAACAAATCAGGAGAAAATCCGTTTTCGTTAGTCATTAGCTCACACCGTTTGGAATAGATGCTCAGATGAGGATCTGGTTTTGTGTGTCCACACGTTTTCCTTTCAATAAATTGGAGCAATGGATTTTTAATAAAAAATTGTATGACAGTAAGTGATGAGTTAAAGATACCCTCATAGCTGGGACTTGAGCTGAGCTGATGGCCTGTTTTTAAAGTGATGCCACCAGATGTACATGTACCATCACACAGAAATGAGATGCTTGGTGGAGTTGCGGTAAAATTAATGAAGGAAAATTATATGTTTAGAAACGTCCCTAACACTGGAAAATACTGCACAGCAAAAAGATGGGTTTTATAAAGACTTTGTTCCTAAAATTATACGAATGCGTGCATGTTATCCTGCTGCGTTTTTTCCCTCTCCAAGGCGGTAAACATGAGTAATAACCTCAAGAGCTGTAAGGGGAACAAGCAGTTTTTCCTTGCAACAGCAGTATGGTGGGCAGAGTCAGAAATCAAGGAGAATGTATAATGATGATGGTAATATATCACATATGCTTGAGGCTGGTGGGAGCCAATGGGCTGGCGTGAGCGCTTTGGAAGGGAGGAAACTGTACTTTTACAGCGTATCCATTTATTAGAATAAAATGGGGACGACTTCGAGCATTCCTCCTCTTTCCTTCAAGACAAGGCTGTTCATCTGCAAAGTTTATTTTACACTGAAGTACAATAACGCATGGCTGTTTGATCCTTCTGAGCTGTGGTTAGCTTCCCCCTTTTGGCAGGGGCCGAATTTGCTGCAGTGTGGATTTGAAGCTCTCTCTGAAGTGCAGCTGAAGGGAAATTAGTCTGCATCGCTTTCTTCCTTTCTTTTCGTAATCTTTTGGGACCTACAAAATCTGCAGATGTTTAACAGGAAGGAAAACGCTATGTGCATCTTTGCTGTTTAACTCAGCTCCAACATTTCTGTTTCCTTCAG
Seq C2 exon
GTTTGACTTTGAAAGCTTGGAGAACAACGTGGAAAACTCCATGGACAAGTCCAAGCCTTGGAGCCGGTCGATCGAGGACCTGCACAGGGGCAGCAATTTGCCCTCACCAGTTGGCAACAGTGCCTCGCGCTCTGGCAGGCACTCCACGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.423
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(23.0=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(10.7=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTCAGAGAGTTCTTGAATGA
R:
CGTGGAGTGCCTGCCAGAG
Band lengths:
232-1530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]