MmuINT0065125 @ mm10
Intron Retention
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:53051200-53054606:+
Coord C1 exon
chr2:53051200-53051283
Coord A exon
chr2:53051284-53054453
Coord C2 exon
chr2:53054454-53054606
Length
3170 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
GCATTCCTTTTTTGTTTTAGTTT
3' ss Score
9.49
Exon sequences
Seq C1 exon
ATGGGTCAGAGAGTTTTTGAATGAAGAAAACAAAGGCCTTGATGTTCTTGTGGAGTATTTGTCTTTTGCACAGTATGCAGTCAC
Seq A exon
GTAAGTAAATATAGCTGGCTTGCATGTCACTTTCACAGGGTGAGGTGTAGCCTGGTGGTAAAATTCCATACCTCACTGAAGGCAGAAACCCACAAGGAGGGTGTGTGGCGCTTACAGAGATTTATCTCTGATTTTGTAGCTCAAACCAGCCACATAATTAGCATTAGAAATGCCTTCAAGGCAGAAATAAACCAGGCAAGTAAAATTCACCTTTAAGACCTTCGTCTTATGCTAGGGATCAAACCCAGGACTCGGCTTTGCTGCTGAGCTATAGCTATGATGCGGAAGACTTTCTGGAGGGCTTGGGTCACGTGACTCTGTGTGGTAGAACACAAGAGTGGGAGGTGGTATGATACTGTACTGGTGCATGCCGAGCCCATATTGTACCACTGGCGCACACCCCGACCCTGTGATGTAGCTGGGGTGTAAAGCCTTCCCTTATCATGTGTTTATCTCGGCAGTGAGAGGGAAGTGGTAAAGGTGCATTTGTGTGTGTGTTGGCAAATGAGCAGATAAGGATGCAGCATTAGACACCAGCTTAGTGGCCCTGGAGGAAGGAAAACTGGTGTTCCCCTTTTATTGTCTTACACTTGCAGGCTTTGGTTTTCTGCCACATGCAGGAATAGTACTTGGAGCTGTGAAGGAAAAGATTAAGATGCAGAGCCATATTATTCCACATCACTTTCCATGTTCATGACTTCTGGGATGATTTATAACAGGGCTACACAGTGTAGAGTAGACAGAGACATTCTCCTTTCAACATTTACCCTTTAATCAGGAAATAGTCCAAAATCTACAGATAGTCTTACATTTGCAGGGTGAGGCAGTATTGATGTTGTGTTTTTAATTAGACAAGAGAGATGCTTCAGACAGATGTTTCAGCCCATGAGCTATTTGGTTTTTTTTTTGTTTTTGTTTTTTGTTTTTTTCTGGGTTTTTGTTTTGTTTTAAAGAGAGGCTCTCAGGATGTATATACAAGGCTAGCTTTAAACTTGTGGTAATCTTCCTGCCTCTGCTTCTTAACTTTGTGAATGTATCCAGTCTTTTTTTTCAAAGGCAGACTTACTTAGTTTGATTTTATATATGTGGATATTTGACTACATACATGCAAGTGTTCTCCCTCTATATGACCATTGCATAGAAGAGGGCATTGAATATTTTAACTGGAGTTACAGACATTTATGATTTGTCATGTGGATGCTAGGAACCAAACCTAGGTCCTCTGAAAGAGCATCAGTTGCTTCTCTTTAACCATGATTCTTCTCGCCAGCCCCTCCATTCTTCTTTTTAATAGTAACAACTTGTTTTCAATATTTACTCACTCCAAGGAGTCTGAATCCCTGGCTGGGTATTTTTTTCTGATTTCCACCCCTTTTCAGTGCTCGTGAAGAAGAAACTACAATTATTCTTTTCTTAGTTTCATGGTTATTAACCAAATCTGATACAATAGATTTCTATCTTGATACCTCTGATAATAGTATAGGAAATTGTTTCCTGAGATGGAATATGCTATAAACACTAGGAATTATATCAAAAGGATATTTCTCATCTATTTCTGTTACTTTGAATCTTATAATCTCTATGACAAATCATATTATGACAAAATATTTCCTCTTATGAAGTTTAAAATCTAAATGCATATTTGTATCATTTAAGGAAGACTAAGAAATTGTTTGCTATATTTAATGAATCCTTTACTTACTTGAGAAGAGGGCTTGGAAGTCAGATTTTCTCAAATGTGGCCTCCTGTTGGACTAGTAGGGACAGGTCTGTGGTCCTGTGCAGGAATTCTGTGTTAGCTGCACTTGAACCTTTGGTTTTGTTTGAGGACGTTAGCACAATACACTTTGTGTATTGATTTTAGTTTTGTTTTGCTTTATTAGGCTATGTTATATAATTTGTCTTTATTTTGAAAATTCTTACTGTTCCCTGATATTAGTGATTTCCCAATCCATGGAATGAGAGACAACTGGCTTTAAGTCTGTCTGAAATAGAAGCGTCCACCAGTTCACTAAAGTGTGTGTTTCTTGCATTTTGGTCCCAGGCACATAGGGAGGGGTGAGAGGACTGTCATGGGGCGTGTGACATGTCCACACCATGAGAGCTCATCATATGCTCCTTGAAGTCCTCTCTATCTCAGTGATAGCCTTCTATTTTACTACCTCAGGTTTTCTTAGACTACCCTATTCTTCCTTTCTCCTCTTCAACCTTATTACAACACAAAAGTCTGGGATCAGCCCCACCTGCCGACTCTGTGTGCCTGTCCCTGATTTGTGACTAACCTTAAAAACTAGATCATATCCCCTAGTCTTTAGGTGGCCGTTCTGATGATGTTTTTCTTCTGGCAGCCATGCTTCCTAAGCATGATTTCCAGCACACTTTACTTTCTCTTCCAGCTCTTTTGTAGTCTTTTAGAGAATATTAAAGTGTAGCTGCTGTCTGATCGGTCAGAACTGAGGCGAGAAACACTGCAGTGTTCTTAGGAGAAAGCAGATCAACTAACTGTGTGAGGGAGGAAATGCACGGGATACAAAGGCCTGCTTGTTTAAAGACTTGGTTCCTAAGGCTACGCGAGAATAAGCAACTCCACTGGCCACTTATTCCAACATGGTTGACATGAGTAATAACCTCAAAAAAATGTCAGAGGAACAACAGTCTCACTTTAAAGAGCACCACATTGAGAATCGAGTCCAAAATCAAAGCCAGTCCATAGCTGCACTGCTAATGCATCACATATGGTTGGAAAAGGACTTGCTAACACACTAGGAGAAAACGCTCAGTGAAAAAAACTGATGGGTAGGAATGAATTAGTATAAGCCTAACATATCTGCTTGTTAAAGCAAAATGAAGACAGCTGTGAGAGCTCTTTCTATCTTCCAGCATAGCAGCCCAGTAATTGGTAAGCCAGCAAGGAAGATGCAAACAATATACAGTGACCCAATGTAAGCTGTTTGTTGCTAATGATTCTTTTGCCAGACCCAGTGTTTGTAATCCTCACATTCTCGAAACTAACACTGAGACCGCAGAAATTGTTATGCGTTTCCTTTGGCTGCAAACACCTCTCGTGTTATGGTGAAGGATGCGGTGGAGGAAAAGCAGGTTGTGTTTGTCTACGTCTGTGTCTGGAAGTTAGTGTCTCGGTTTTGAGTAGCATTCCTTTTTTGTTTTAG
Seq C2 exon
TTTTGACTTTGAAAGTGTGGAAAGTACCATGGAGAGTACGGTGGACAAATCAAAGCCCTGGAGCAGGTCCATCGAGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGTGTGTCCCGCTCTGGAAGACATTCTGCACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053:ENSMUST00000090952:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.165
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(20.4=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(8.0=21.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types