HsaINT0065142 @ hg38
Intron Retention
Gene
ENSG00000157827 | FMNL2
Description
formin like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:152558740-152561035:+
Coord C1 exon
chr2:152558740-152558823
Coord A exon
chr2:152558824-152560882
Coord C2 exon
chr2:152560883-152561035
Length
2059 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
GCATTTCTCTTTTGTTTTAGTTT
3' ss Score
9.73
Exon sequences
Seq C1 exon
ATGGGTCAGAGAATTTCTGAATGAAGAAAACAAAGGTCTTGATGTTCTAGTGGAATATCTCTCATTTGCACAGTACGCGGTAAC
Seq A exon
GTAAGTAAAACTTGGCTTGCTTGCATTTGAATTTTATGTGGTCACAGCAGATGCTACTCAGTGGTAAAATTATACACCACAGAGAGGGCAGAAACTCAGAAGCAGATGTGCTAGGGCTTAGGGAGGTTTGTTTCTGTTTGGGTAACTAAAAACAAATCACATAATGGTATTAGAAATGCCTTTAAGGCAGAAGTAAAACAGGTGAATAAAAATCACTCTTAAAGGAGCCCTTATTTTCAAAAGTAACGCTTTCTTTAGGGCTTAAGTTACATATATGGAAGAATAGTCTAACAGTTGGTGAAAGAGGTATGTGATAAATCACTAGGCGATGCAAAAGAGTGACTCCCTTTTTCTTTTAAAAATGATGTCTGCATGTATATTTGCATATGCTAGTAAGTGCATAGAAAATGATTGCAGAAACAGATACCAAACGTAGTGGCACTGGAGGGAGAGGTAACAGGAGGCTGTTCCTTTTTCCTTGATATGCATTTGTATTGTTTTGATTTTCTGCCCATAAGCTGAAGGGGAGTAAAAACTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTGATCAAGTGATTCTCCTGCCTCAGCCTCCTGAGAAGCTGGGATTACAGGCACCCACCACCATGCCCGGCTAATTTTTGTATTTTCAGTAGAGACGGGGTTTCACCATGTTGGGCAAGCTGCTCTCGAACTCCTGACTTCAGATGATCCACCCGCCTCGGCCTCCCCAAAGTGTTGGGATTTCAGGTGTGAGCCACCGCACCCAACCTAGAAGCACTCATTTCTATGTGTGTTTCCTTTTTCTGCTGTGTGAGAGTGAGGATGAGCTGAGAGGAACACACGCTGAATGGCGTGGGAGCTGTAGAGTAGCCTAGCGAGGGCATCAATGCCACGAGTGATTTCAGGATGCCCTCCTCGTCTTACCTTCTCTCATCTCAGTGATTGCTTTCTCTTTTTAGCAGTTAAAATTTTATTAGATTACCCCATTCTAACTCTTTTATGTTCAGTATTACCTCCTGCAGCCAAAGGCATGACAGAATTGTGACCAGTTGCCTCCATGGACTTTGTGCATCTATCTCTGCTATCTGATTAGTCTTTTATAGGTGAAAGTCATCACCAATTTTCAGATGAAGGTTCTAACCAAATATTTTATTTTGGCAGTTATACTTTTATAAAAAGTTACACTTTGATTTCCAATATGTATTATTGTTTTTTCTTCTGCAGTATCCTCTAAGATTTTCCTGAGGATATTAAGTGTAGCTACCTTCTGATTGTTCTACTGTCTGATCAGGTGTTGCTATGGATAGAAACAATTAATACAATTTCTTTTTTTTTTTTTTCTTTTGAGAAAGCACAGTTACTTTGTGAGGGGGGAAATGCATGGAGCACAAAAGCCTGTCTGTTTAAAAACTTTGTTCCTAAAACTATACAAGAGTGAGCAAGTTAACTTGTCATTTATTCTAACATGGTTAACATGAGTAATAACCTCAAAAAATGTCAGAGAAACAACAGTCTTACTTTAAAGAGCACCACACTGGGAGGAGATTCCAAAATCAAAGCAAATCCATAACTTTGCTAGTAATGTATCACATATGCTTGGAAAAGTACACTTGCCAACACACTAGGAGAAAATGCTCAGTGAAAATTGATGGGTAGGAATAAATTAGTATAAGCCTAACATATTGACTTGTTAAAGCAAAATGAAGACAGCTGTAAGATCTTTTCCCCCTTCCATCATACCAATGTTAGTGACTTATATATTAGCAAGCCTTATAAAATAAAATACAAATAATATATCACTATTTAATTTTTGCTGCTCATTGTTCCATTATTCTTTTGCCAGACCCATTATTTGTCATTCTGTATTCTTAAAGCTAACACTGAGCCCATAGAAATTCCATTATATTTCCTTTCCAGTTTTCTTTGTTTACAAAGACTTTCCATACTAAGGTGCAGATGTCTTGTAGGAACAGCAAGTTATACATGTTCGTTTATACATGTGAATGTGAATTTTTCAGTCTTCAATGGCATTTCTCTTTTGTTTTAG
Seq C2 exon
TTTTGACTTTGAAAGTGTGGAGAGTACTGTGGAGAGCTCGGTGGACAAATCAAAGCCCTGGAGTAGGTCCATCGAGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGTGTCTCCCGCTCTGGAAGACATTCTGCACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827:ENST00000288670:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.190
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(20.4=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(8.0=21.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development