RnoINT0061652 @ rn6
Intron Retention
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38595057-38598579:+
Coord C1 exon
chr3:38595057-38595140
Coord A exon
chr3:38595141-38598426
Coord C2 exon
chr3:38598427-38598579
Length
3286 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
GCATTCCTTTCTTGTTTTAGTTT
3' ss Score
9.52
Exon sequences
Seq C1 exon
GTGGGTCAGAGAGTTTTTGAATGAGGAAAACAAAGGCCTTGATGTTCTTGTGGAGTATCTGTCCTTCGCACAGTATGCAGTCAC
Seq A exon
GTAAGTAAACGTAGTTTCACAGGGTAAGGTGTAGCCTGGTGGTAAAATCACATACCGCGCTGAAGGCAGAAACCCACAAGGAGGGCGGGTTGAGCTTACAGAGATTTATCTCTGATTCTGTAGCTAAAACCAATCACACAACTGGTATTAGAAATGAGACAGGTAAGTAAAAAAGTCACCTTGCAGACCTCTGTCTTATGCTAGGGATCAAACCCAGGACTTGGCTTTCCTGCTGAGCTCTAGCTATAATGCAAAAGACTGCCCTAAGTGCGTGGGTCACATGACTGTACGTGGTAGAACTGTAGAGTGGTAGGTGACATATTGCTGAGTAGGCAAAGGAAGTACCGAAAAATGAGTGCCCTTTCACTTTCTTATTATATTTCAGTGTGCTGGGAATTGAAGCAGGGCCTTGTGCATACTAAGCCCATGCTGTACCAGTGGTGCACAACCCGACCCTGTGATATAGCCGGGGTGTGGGTCAGTAGTAAAGCCTTTGCTTACCATGTCTTCATGTGTTCGATCTCAGCATGGAGGGGGAATGATAGAGGTGCGTTTGTGTGTGGCCAATGAGCAGAGAAGGACGCAGTGTCAAACACCAGCATAGCGGCCCTGGAGGAGGGAAAGCTGGTGCTCCCTTTCACTGTCTATGTGTTTGCAGCCTTTGGTTTCCTGCCACGTGCAGGAAAAGAACTTGGAACAGAAAAGGGAAAATTAAGTTGCATAGCCAAATTGTTCCCCATCGTTCTCCACATTCATGGCTAATGGAATGTTTTGTAACAGGACTACAAAGTGTGCAGTTGGCCCCAGACATTGTCCTTTCAACATTTATCCTTTAATCAGGAAAAACCTACAGATCGTCTCACATGTGCCCGGGGAGGCAGGATTGATGCTGTGTTTTTAATTAGACAAGAGAGATGCCACAGCCCAGGAGCTGTTTGTTTTTTTCCTTGCTGTGTGATTTTTGTTGTTGGTGTTTTGTTTTTGTTTTTGTTTTTTAAATCTTGTTTTAAAGAGAGGCTCTCCTAGCTTTAAACCTGTGGTAATCTTCCTGCCTCCACTTCTCCACTTTGTGAATGCATCCACTTCCTTTTTCAAAGGCAGACTTACTTAGTTTGATTTTATGTGTGTGGGTATTTGCCTGCACACATGCATGTGCACTCCCTGTATGTGACCATGACCATGCACAGAAGAGGGCATTGGATCTTTTGGAACCAGAGGTACAGACATTTGTGACTTGTCCCATGGATGCTAGGAGCCAAACCAAGTCCTCCGAGAGAGCATCAGCTGCTCTCAACCCCCGAGTCTTCTCTCCAGACCCTCCATTCATTCTTCTTTTTAATAATAACAACTTGTTTTTAATCTTTCCTCATTCCAAGGAGTCTGAATCCATGGCTGGGTGTTTTTCTCTGATTCCCACCCCTTCCCAGTGCTTGTAAAGAGGAAGCTACAGTTATTCTTTCTTAGAGTTTCATGGTTATTAACCAAATCTCCTATGGTGCCTTTCTATTTCGATACCTCTGATAGTACTATAAGAAATTGTTCTCTGAGATGGGATATGCCATACACACTAGGAATTCTATCATCTATTTCTGTTACTTTGAATCTGATAAGCTCCACGATGAATCATATATTATGATAAAAATATTCCCTCTTACACAAAGTATAAACTCTAGATAAATATATCATTTAAGGCAGACCAAGAAAAATTAGGAGTAAGTAAATAACATATTACAGTTGTTTGCTGTATTTAATGAGTCCTTTGCTTACTTGACAAGAGGGCTTGGAAGCTAGATTTCTCAAATATGGCCTCATGTTGGTCTAGTAGGGGCAGGTCTGTGGTGCTCTGCAGGAATTCTGCAGTTAACAGGGCAAGGCAATAACTAACTAAATGCTAGCACTTGGAATTTGTGTCAGCTGAACTCGAACCTTTGGTTTTGTTTGAGGACATCAGTTTTAACCACTTTGTGTATTGGTTTTAGTTTTGTTTTGCTTCATTTAGATGATAAGTTATGTAATTTGTGTTTTACTTTGAAAATTCCTGATGTTCCCTGGTAGTAGTAATTCCCCAACCCATGGAACTGGTTTCAGACAACTGGTTTTGACTCTGTCTGAACTAGAAGTGTCTACCAGTTCACTGAAGTGCGTGTTTCTTGCATTTTGGTCCCGGGCATATAGGGAGGAGTGACTTGTGACATGTTCACACCATGAGAGAGCTTGTCATATGCTTCTTGCAGTTCTCTCCATATCCAGGTTTTCTTAGATTACCCCACTCCGCCTCTCTCCTCTTCAACCTTATTCCCGAACCCAGAGGTATGACAAAAAAGTCTGGGATCAGCCCTGTGTGCGGGCCCTGTGTACCTGTCCTTGCTGTGAGACTAACTGTAAAAGTTAGAGTGTATCCCCAGTCTTTACGTAGCCATTCTGATGCTGGTTTTCTTCTGACAACCATGCTTTATAAGCAGCTGTCGATGATTTCCAGCACACATTATTTTTCTTCCTGCTCTTTTATAGTCTTTTAGAGAATATTAACTGTAGCTGCTGTCTCTTTATTCTGCCGTCTGATGGGGCAGAACCGAGGCTAGAAACACTGCAGTGTTTTTAGGAGAAAGCGGAGTAACTAACTGTGTGAGGGAGGAAATGCACGGGATACAAAGGCCTGCTTGTTTAAAGACTTGGTTCCTACGGCTACACGAGAATGAGCCACTCCACTTGCCACTTATTCCAACATGGTTAACATGAGTAATAACCTCAAAAAATGTCAGAGGAACAACAGTCTCACTTTAAAGAGCACCGCATTGGGAAGAGAGTCCAAAATCAAAGCCAGTCCATAGCTGCACTAGTAATGCATCACATATGGTTGGAAAAGGGCTCGCTAACACACTAGGAGAAAACGCTCAGTGAAAAATTGATGGGTAGGAATGAATTAGTACAAGCCTAACATATCTGCTTGTTAAAGCAAAATGAAGACAGCTGTGAGAGCTCTTTCTTTTCCTTCTTCCAGCATGGCAGGGCCAGTCATTGGTAAGCAAGCCAGCAGGATGCACACAATATACAGTGTTAGCTGTTGGTTGTTAATGATTCTTTTGCCATACCCAGTGTTTGTAATCCTCACGTTCTCAAAACTAACACTGAGACCACAGACATTCTTTTTTGCATTTCCTTTGGCTGCAAAGACTTCTCTGGTTACGGTGAAGGATGTGGCGAAGGAATAGCAGGTCGTGTTTGTCCTCGTCTGTGTCTGAAAGTTAGTGTCTCGGTCTTGAGTAGCATTCCTTTCTTGTTTTAG
Seq C2 exon
TTTTGACTTTGAAAGTGTGGAAAGTACCGTGGAGAGTACGGTGGACAAATCAAAGCCCTGGAGCAGGTCCATCGAGGACCTGCACAGAGGGAACAACCTGCCCTCCCCTGTGGGCAACAGTGTGTCCCGCTCTGGAAGACATTCTGCACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567:ENSRNOT00000085545:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.269
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(23.7=100)
A:
NA
C2:
PF063718=Drf_GBD=PD(9.3=21.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]