HsaINT0071248 @ hg19
Intron Retention
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:17830]
Coordinates
chr9:132889762-132891040:+
Coord C1 exon
chr9:132889762-132889845
Coord A exon
chr9:132889846-132890918
Coord C2 exon
chr9:132890919-132891040
Length
1073 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
GGTGGTTTTTAAACTTGCAGCTC
3' ss Score
6.17
Exon sequences
Seq C1 exon
ATTGTGTGTTACATATACTTCACTAGGATCATTGCATTTCTCCTCAAACTCGCTGTTCCATTCCAGTGGAAGTGGCTCTACCAG
Seq A exon
GTACGCTGCTCACAGGGCAGAATGCCAGAGAATTTATGCCTGAGGATAAAGTCTTGAAGTGTAACTTAACAGTTGTTACTAATTTATCTGGGAATGACCACTAAGACCTTCCATCTCTTCTTTTTTTTAACTAAAAATTTTTTTTTTAGTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGGATGCACCACCATGCCCAGTTAATTTTTGTTTTTTTAGTAGAGATGGGGCTTTGCAGTGTTGGCCAGGCTGGTCTCAAACACCTGATCTCAAGTGATCCGCCCACCTTGGCCTCCCAGTGTTCTGGGATTACAGGTGTGAGCCACCACACTTGGCCTCCTTCCATCTCTTCTGGCCTATAATTGAGATGATCTGTTTGTCCAGAAATGCTGCTGGATTCTATGAGGAATCTGAAAATAATTGCATTCTTGATTTTAGTTTTCAGTCTTAAAAGTCAAGAGAAAAGCTTCAGGTAGAGAAAGATTTGCCCTGAATCATTAGAACTTAGATGAGATGTGGTCCTTTCCTTTAGTTACAGGGCTGAGTAGTTAGAATTCAGGCTGCCCTTCTTCTTTGCCCATTTTATTATTTCGATAATAAGTATCTTTGCGACAAACTAGAACTAGCTTAACTACTAGAGGAAGCCACCAAATGACTTTTTTCTTGAATAACTCACTGGGTGCTGTAGGCACTGTGGGAGGAAGTGGGTATGTGGTGAGCTCTTAAAAGCTACCCATGAAGACTGGTGAAAGCACAGCAGAGCACAGCCTCGGAAATGTCAGCCCTGGGCAGGACACTCCTCGTTTAGGCCTCGGCAAGTCTAAGGAAAATGCCCTGTAGCAGGAAGTGGCATCTGAGTAAAGAACCATCGAGTGGTGGGTTGTGGGGAAATATGTCAGTTTGTTGAATTCCACTGCTTTCTGAAGAACAGTGTTGCTAATCTCTTTATTTTGGGGTGGTTTTTAAACTTGCAG
Seq C2 exon
CTCCTGGATGAAACGGCCACACTGGTCTTCTTTGTTCTAACGGGGTATAAATTCCGTCCGGCTTCAGATAACCCCTACCTACAACTTTCTCAGGAAGAAGAAGACTTGGAAATGGAGTCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358-GPR107:NM_001136557:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(34.6=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=PD(30.8=58.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTTACATATACTTCACTAGGA
R:
ACGGACTCCATTTCCAAGTCT
Band lengths:
204-1277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)