HsaINT0071248 @ hg38
Intron Retention
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:HGNC:17830]
Coordinates
chr9:130127483-130130024:+
Coord C1 exon
chr9:130127483-130127566
Coord A exon
chr9:130127567-130128639
Coord C2 exon
chr9:130128640-130130024
Length
1073 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
GGTGGTTTTTAAACTTGCAGCTC
3' ss Score
6.17
Exon sequences
Seq C1 exon
ATTGTGTGTTACATATACTTCACTAGGATCATTGCATTTCTCCTCAAACTCGCTGTTCCATTCCAGTGGAAGTGGCTCTACCAG
Seq A exon
GTACGCTGCTCACAGGGCAGAATGCCAGAGAATTTATGCCTGAGGATAAAGTCTTGAAGTGTAACTTAACAGTTGTTACTAATTTATCTGGGAATGACCACTAAGACCTTCCATCTCTTCTTTTTTTTAACTAAAAATTTTTTTTTTAGTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGGATGCACCACCATGCCCAGTTAATTTTTGTTTTTTTAGTAGAGATGGGGCTTTGCAGTGTTGGCCAGGCTGGTCTCAAACACCTGATCTCAAGTGATCCGCCCACCTTGGCCTCCCAGTGTTCTGGGATTACAGGTGTGAGCCACCACACTTGGCCTCCTTCCATCTCTTCTGGCCTATAATTGAGATGATCTGTTTGTCCAGAAATGCTGCTGGATTCTATGAGGAATCTGAAAATAATTGCATTCTTGATTTTAGTTTTCAGTCTTAAAAGTCAAGAGAAAAGCTTCAGGTAGAGAAAGATTTGCCCTGAATCATTAGAACTTAGATGAGATGTGGTCCTTTCCTTTAGTTACAGGGCTGAGTAGTTAGAATTCAGGCTGCCCTTCTTCTTTGCCCATTTTATTATTTCGATAATAAGTATCTTTGCGACAAACTAGAACTAGCTTAACTACTAGAGGAAGCCACCAAATGACTTTTTTCTTGAATAACTCACTGGGTGCTGTAGGCACTGTGGGAGGAAGTGGGTATGTGGTGAGCTCTTAAAAGCTACCCATGAAGACTGGTGAAAGCACAGCAGAGCACAGCCTCGGAAATGTCAGCCCTGGGCAGGACACTCCTCGTTTAGGCCTCGGCAAGTCTAAGGAAAATGCCCTGTAGCAGGAAGTGGCATCTGAGTAAAGAACCATCGAGTGGTGGGTTGTGGGGAAATATGTCAGTTTGTTGAATTCCACTGCTTTCTGAAGAACAGTGTTGCTAATCTCTTTATTTTGGGGTGGTTTTTAAACTTGCAG
Seq C2 exon
CTCCTGGATGAAACGGCCACACTGGTCTTCTTTGTTCTAACGGGGTATAAATTCCGTCCGGCTTCAGATAACCCCTACCTACAACTTTCTCAGGAAGAAGAAGACTTGGAAATGGAGTCCGTGTAAGAAATCTTTCTTCCCTCTTCCTTAGCCCTGACCCCTTTGCCTAACACAAAGCAGCACAGTGTGAATCGGGTCGGCTGCTCTCAGCATTTCGTGGCTGCAGGGGTGGTTCCTCTATTTTTAGCAGAAGGAAGCGGACACTGGAGCCCCAGGCTGTCTGATCTGGTTTGAAGTACAGTATCTGCCAAACCTAGCTGGGTCTTGTCAGGGAAGATGGAACTTGCCGTTCCACTAAGCATCATTGGAGCCTGCTTTCAAGAACTCAGTGGCAAGAACTTAGGAATATACGTGGCCAGTTCACGAGGGAGAACAGGGGGCCGACTTTCTGTCAGGCCCGCCATCAGGCGCTTACGTCTGAAAATGGAATCTTCTGAGTCATCTCTAAGTCTGCTAATGATCCTCAGACATCCTCTATCGTCAGATAACTGCGTGGCTTTTCACAGCACAATGACTTTGACCTATATCTGAGCACTAATAGGGGCTTTTCTGAGTCACACAGTGAATGACTCTAGGGTCCTATTTTCTGGGAAAGGGCCATCATTGTCTAGAAAAATGAGTAGTGATTAAGCATATTTGCTTGTTAACTGAAATTTGATAAGCCAGGTCAATGCTGTGTTTGATGATTAGCCTAAGGCAGAGTTTTCCCTTCTTGGTTCACTGGTATCAAGTGTTCTGCCCCCAGCCCTGGCAGCCTTTGAATTCTTCCCAATTCAGAGGCTGAGACTCGGCCCATGCTAAGCTCTGCTTGGCTGTCAGCGGGTCAGGCAGCATGGGACAGCTCTCTCTGCTCAGCTCCACGGCAACAGTAAAGGAAGGCAGGTCCTGCCAGCGGGCGCCAAACAGCATCTCCCCATGCAGAGGAAGAAACACCTCCTTCTAAACAGTGGAGAGGAGTGCAGGAGGCCCATCAGCTGTGCCTTTCCCAGAAGTGGCAGGATCTGAGCAAGTGTCTGTTGGTTGAAGAGGCACACATGTCAGGCTGGCAACCAGCAGCATCAGGAAATAACCTAAGACGCGGTGTGTTTATCATTCCCCTGCTGGGAGCCTTTGGCTTGGTCCGTCCGCATAACACGGGGTTCTTTGGGTAGGCAGCTAGAAGCCGAGCGGCCGGGTCGCAGCATCGTCTCCTTTACTGCATTGTACTCCACAGTCGTAATGGGAGGTTCCCGCTTCCCACATCCTTTCCCTCAGCCGTTACATCTTGGAGCCTGGATGCATTATGAAGGTATTTTTGTTTCGTGGCAACAATTTTTTTAAAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358:ENST00000493417:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(34.6=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=PD(30.8=58.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTCCAGTGGAAGTGGCTC
R:
CAAGACCCAGCTAGGTTTGGC
Band lengths:
354-1427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development